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Thank you guys for your excellent comments. For 1, I still do not understand the physiological basis of the Interpolation function. I want to know the relationship between image data and diffusivity. For 2, I am almost okay. For 3, the basis of feeding 798 and 654 into the reaction diffusion equation is still beyond me. I need to be able to explain the mathematics of the codes!
Thanks rhermans for the encouragement. I have made modifications to my question and I am sorry for the ambiguities in the earlier form of the question.