`DendogramPlot` accepts `Axes` as an option. Despite syntax highlighting in red of `Axes` and `AxesOrigin`, `GridLines` etc. these options seem to work with `DendogramPlot`. Inter-cluster distance in a `Cluster` object is given as the third element. ![enter image description here][1] Several combinations of `DistanceFunction` and `Linkage` where inter-cluster distances are highlighted in red and shown as green gridlines in the dendogram plot: Needs["HierarchicalClustering`"] Grid[{{ToString@#[[1]] <> "--" <> #[[2]]}, {Replace[ Agglomerate[{1, 2, 10, 4, 8}, DistanceFunction -> #[[1]], Linkage -> #[[2]]], Cluster[a_, b_, c_, d__] -> Cluster[a, b, Style[c, 18, Red, Bold], d], {0, Infinity}]}, {DendrogramPlot[{1, 2, 10, 4, 8}, DistanceFunction -> #[[1]], Linkage -> #[[2]], LeafLabels -> (# &), GridLines -> {None, Cases[Agglomerate[{1, 2, 10, 4, 8}, DistanceFunction -> #[[1]], Linkage -> #[[2]]], Cluster[a_, b_, c_, d__] :> c, {0, Infinity}]}, GridLinesStyle -> Green, ImageSize -> 500, Axes -> {False, True}, AxesOrigin -> {.75, Automatic}]}}] & /@ Tuples[{{Automatic, ManhattanDistance}, {"Complete", "Centroid"}}] // Column ![enter image description here][3] So ... vertical axis does indeed measure the inter-cluster distances for a given `DistanceFunction` and `Linkage`. For various combinations of `DistanceFunction` and `Linkage` you get the following pictures: {#, Agglomerate[{1, 2, 10, 4, 8}, DistanceFunction -> Automatic, Linkage -> #], DendrogramPlot[{1, 2, 10, 4, 8}, DistanceFunction -> Automatic, Linkage -> #, Axes -> {False, True}, AxesOrigin -> {-1, Automatic}], Agglomerate[{1, 2, 10, 4, 8}, DistanceFunction -> ManhattanDistance, Linkage -> #], DendrogramPlot[{1, 2, 10, 4, 8}, DistanceFunction -> ManhattanDistance, Linkage -> #, Axes -> {False, True}, AxesOrigin -> {-1, Automatic}]} & /@ {"Single", "Average","Complete", "WeightedAverage", "Centroid", "Median","Ward"} // Grid[Prepend[#, {"", "EuclideanDistance-Clusters", "EuclideanDistance-Dendogram", "ManhattanDistance-Clusters", "ManhattanDistance-Dendogram"}], Dividers -> All, Alignment -> Bottom] & ![enter image description here][4] EDIT: What I get for Frederik's example in the comments: DendrogramPlot[Prime[#] & /@ Range[30], Axes -> {False, True}, AxesOrigin -> {-1, Automatic}] ![enter image description here][5] [1]: https://i.sstatic.net/bCCRR.png [2]: https://i.sstatic.net/qRMQ1.png [3]: https://i.sstatic.net/3Ezcq.png [4]: https://i.sstatic.net/eTTCG.png [5]: https://i.sstatic.net/WA3dX.png