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This is the sequence of commands that I use to create my CDFs.

testCDF := DynamicModule[... some nice code]

nb = CreateDocument[{testCDF}
    ,Visible -> False
    ,WindowTitle->"Export Test"
    ,WindowMargins->Automatic
    ,WindowSize->Automatic
    ,WindowElements->{"VerticalScrollBar","HorizontalScrollBar"}
    ,ShowCellBracket->False
    ,Deployed->True
];

(*options to remove wolfram toolbar*)
SetOptions[nb, PrivateNotebookOptions -> {"PluginToolbarEnabled" -> False}];

CDFDeploy[NotebookDirectory[] <> "ExportTests2.cdf", 
  nb,
  "Method"->"Standalone",
  "Target"->"PlayerPro"
];

NotebookClose[nb];

The command to remove Wolfram bar is commented.