Questions tagged [systems-biology]

Questions about accessing biological data, built-in functionalities directly applicable to biological modeling, or about creating such tools etc.

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Gillespie Stochastic Simulation Algorithm

The Gillespie SSA is a Monte Carlo stochastic simulation algorithm to find the trajectory of a dynamic system described by a reaction (or interaction) network, e.g. chemical reactions or ecological ...
25
votes
2answers
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Turing patterns

I am new in learning Turing patterns. Is there any sample code available to generate such patterns in ecology model (Lotka–Volterra model)? The above figure is taken from this paper, and is based on ...
2
votes
1answer
294 views

Bioinformatics: RNA-seq and Gene Set Analysis Pipelines

Context The decreasing price of high-throughput genome sequencing has skyrocketed its use. While Mathematica is a remarkable language, it does lag behind in some regards for various reasons; notably, ...