All Questions
Tagged with systems-biology plotting
8 questions
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Plotting Dengue Infection Prevalence Sensitivity to Biting Rate Variations
I want to explore how varying values of the biting rate affect infection prevalence in humans in our modeled dengue outbreak, keeping all other parameters constant.
I provide you the code that I use ...
2
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2
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391
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Performing maximum likelihood estimation for SIR Model
The code first produces a plot of the dataset, then simulates the SIR model using the parameter values we found in the manual calibration to the full dataset of the total number infected .
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1
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93
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Writing a sum-of-squares function or SIR model fits
I am trying to write a function that calculates and returns the (sum-of-squares) value (SSQ) for the fit of a simple SIR model, parameterized with given values of $\beta$ and $\gamma$, to any dataset.
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2
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1
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Plotting a 4-dimensional graph with the fourth dimension depicted using a color scheme
I wish to use Mathematica to plot a 4-D graph of R0 (basic reproduction number of a disease) against three given parameters in which the three parameters are represented by the x-, y-, and z- axes and ...
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2
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1
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75
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Plotting several curves of the same variable for different values of a parameter
I am coding an SIR model using Mathematica. I would like to know how to plot multiple curves of I on the same figure for different values of the parameter beta, say for the values of 0.001, 0.002, 0....
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251
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How to plot contour plots of R0 against two parameters?
I am working on an epidemiological model and I would like to know how to plot contour plots of R0 (basic reproduction number) against two given parameters using Mathematica. An example contour plot is ...
- 99
2
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1
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464
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How do I plot this system of ODEs using Manipulate to change the b and k variables?
I'm trying to create an SIR model of disease. These are the starting parameters, and i'd lake to be able to manipulate b and k. Thanks!
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