Questions tagged [parallelization]
Questions on parallel computing in Mathematica.
788
questions
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How to use parallel computation in mathematica for numerical Integration
I have a multi dimensional integral and I need to integrate it numerically and than plot it over an extra variable for zeta = 0.5.
...
0
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1answer
21 views
ParallelSum issue inside package
I have the following very simple package with only one external function SumSeries[]:
...
0
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0answers
21 views
Error using ParallelMap to evaluate NIntegrate of numerical derivative ND
I want to evaluate a numerical integration in which the integrand is constructed out of a function f and its derivative f'.
<...
1
vote
0answers
71 views
Parallel/Multi-thread element code generation using AceGen
I am using AceGen to generate source code for finite element simulations in AceFEM. I have elements with a very large number of vertices/degrees of freedom which can take a very long time to compile.
...
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0answers
43 views
How to resolve these errors that pop up when using 'Compile' for a large function? [duplicate]
The problem
I have been wanting to make my code which solves an optimisation problem faster. This led to this question on here and I realised from there that the root of the problem is the very slow <...
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0answers
31 views
Handling large data generated by a script file (using parallelization in Mathematica)
I want to write a script file Script_file.m which I am going to run on a server and collect all the data in a file named ...
1
vote
1answer
61 views
Why the computation time is shorter in this case?
The task
I would like to compute the Lorentz transformation $\mathbf{p}'$ of an arbitrary 3-momentum vector $\mathbf{p}$ given a boost characterized by some other momentum vector $\mathbf{p}_{N}$. The ...
3
votes
3answers
67 views
How to avoid duplicating the same data on the master kernel into each subkernel?
I have found the same question
Avoid copying memory for each subkernel
However, there was no proper answer. This question was posted in 2015. Now it has been 6 years. So, I wish to find the solution ...
0
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0answers
47 views
How to parallelize Total[]?
I have a list of length ~10^4, with each element being a power series (SeriesData expression). The list has been computed by an earlier part of the code, but I'd like to sum up the list. The Total ...
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39 views
Can Predict/Classify/NetTrain be parallelized over multiple computers (kernels)?
A similar question was posted more than five years ago here and I was wondering if anything has changed and whether there is a way to parallelize Classify/Predict/NetTrain now. More specifically, ...
2
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0answers
42 views
ParallelTry Hangs on previously working code
When I run the below ParallelTry command, it just sits on it and says its being evaluated, but I cant abort it, it doesn't return what I am expecting, and I have to ...
2
votes
0answers
25 views
Save the internal state of each kernel and start the computation again later
I use ParallelEvaluate[], inside that is a lengthy code, many variables are calculated and updated may times, lets say a=..., b=..., c=...
Lets say I want to stop calculation once, and start ...
14
votes
1answer
891 views
Metropolis-Hastings Algorithm - Significantly slower than Python
I would like to code a Metropolis Hasting algorithm and thought I would get the general scheme of things going with a toy example.
I think I got it running but my Mathematica code runs significantly ...
5
votes
3answers
224 views
Speeding up FactorInteger for product of two primes
I have a large integer $N$ of size about 10^150. I know that $N$ is a product of two primes $p$ and $q$. I also know that both $p$ and $q$ are of roughly equal size, so one of them is not, for example,...
7
votes
1answer
144 views
Fast Evaluation of a series of dot product
Context
I have a function that depends on 3 real variables x,y and z and that is defined by a series of matrix products. The evaluation of f for a specific (x,y,z) is fast ~0.02 sec but I want to ...
2
votes
0answers
61 views
Can I parallelize this function?
Can I and should I parallelize this function ? my aim is to have faster calculations
below is a toy function in which I kept the structure of the real function I am using. It uses ...
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0answers
43 views
ParallelTable of NIntegrate of an Interpolating Function
I construct a 2D interpolating function using the following data (MWE):
...
0
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0answers
32 views
Memory leak while using ParallelTable
I am populating a table using ParallelTable. The entries of this table are given by a function written as a module, which depends on several modules itself. Here's a rough skeleton of the code:
...
1
vote
1answer
45 views
Unique symbol for parallel kernels
For each kernel, a unique symbol can be generated with Unique[]. However, since it's basically defined by the growing ...
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0answers
52 views
How to improve the parallelization of the following piece of code?
I'm new to the parallelization of code. I have a code that takes so much time to run and I'm trying to parallelize it. I'm copying below the piece that I need to improve. Can someone help with the ...
1
vote
1answer
35 views
Manipulating ScalingFunctions for several Plots inside Table is working, but not working inside ParallelTable
I've encountered a problem I can't make sense of:
I'm combining the ListPlot of a HPLC chromatogram (called bgcorrected in this case) with a ...
0
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0answers
72 views
An issue with ParallelTable
Consider a function
function[x_,y_,method_,distr_]:=NIntegrate[distr[x,y,z,t],{z,zmin[x,y],zmax[x,y]},{t,tmin[z,x,y],tmax[z,x,y]},Method->method]
Here, ...
0
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0answers
37 views
Why does Mathematica 12.1 fail to launch available parallel kernels
I am running Mathematica 12.1 on Windows 10 Enterprise from a local PC with 24 cores using a remote site licence from my University. Under Parallel Configuration I have requested 24 local kernels (...
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1answer
52 views
0
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0answers
25 views
parallel computation fails
I have a code that evaluates matrix elements. It works correctly in sequential mode (one Kernel).
It involves a custom function BariVi which is declared earlier and ...
0
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0answers
46 views
Finding if a number is perfect square [duplicate]
I used the following code to found if a specific number is a perfect square:
...
0
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0answers
41 views
Run Batch Job on more than One node of HPC
In continuation of the previous Ques;
I am able to run successfully my batch job on one node of HPC through-
pqsub -n 40 -t 1 -q atulya run.sh #atulya is HPC and at ...
1
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0answers
28 views
Easiest Way To Parallelize Derivatives
What I would like to do
I have a Lagrangian (a scalar). Of this function I take the derivative w.r.t. to metric-components. Of the result, I take again a derivative. The formula looks like
$\partial_a\...
0
votes
1answer
140 views
Running Mathematica package on supercomputers by parallelizing it
a) I am thinking of installing Mathematica on supercomputers of my center. and running programs by parallelizing it for faster computations. But I was told that running Mathematica on supercomputers ...
2
votes
0answers
44 views
ParallelTable never ends on simple ContourPlot loop
Context
I am interested in solving Transient Gray Scott equations.
Following the documentation:
I define the equations
...
2
votes
1answer
82 views
Parameter space search routine is too fast?
I wrote a small script to comb through the parameter space of a function looking for where the function satisfies a certain relation everywhere on its (co-ordinate space) domain. However, since I am ...
1
vote
0answers
53 views
Optimizing a parameter space search
This is related to my previous question: Solve for parameters so that a relation is always satisfied
The Problem
I am searching the parameter space of a large (many terms) function to find where the ...
1
vote
1answer
27 views
How to share multiple “tagged” functions (symbols) like f[a][b] in parallel kernels?
I would like to give some context: I need to analyse many data sets stored in files using different kind of analyses. To keep track I like to tag each results of my analysis for example like ...
1
vote
1answer
43 views
How to collect results from compiled function in ParallelEvaluate?
I am using Mathematica 12.x and have a compiled function, returning many things. I would like to run several instances of this compiled function, one for each core of my CPU, and then collect all of ...
6
votes
1answer
97 views
Efficient construction of a SparseArray from LIL (list of lists of column entries)
In Python scipy.sparse, there are methods to convert between CSR, CSC, LIL, DOK, etc. implementations of a sparse matrix. What is the most efficient way in Mathematica to construct a ...
0
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0answers
25 views
If statement in dynamic cluster query
I use a High-Performance Cluster for some of my work. I can dynamically see the state of the work but I couldn't use the If statement in the cluster query. I want to hear a sound when my work finishes....
0
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1answer
74 views
Use of ParallelDo with an iterative or recursive calculation
Is it possible to use ParallelDo (or any similar parallelization method) to speed up the calculation of an iterative calculation, which takes a previous calculation ...
0
votes
1answer
45 views
EvaluationObject not appearing
By using
ParallelSubmit[1 + 2]
the output is simply
EvaluationObject[16,1+2,<>]
I was expecting to see
.
Even in the ...
3
votes
2answers
94 views
Why is DistributeDefinitions taking so long with 100-300 Mb constants?
Why does DistributeDefinitions take so long to distribute variables that are 100-300 Mb in size?
I am setting up ParallelTable ...
1
vote
0answers
57 views
How can I try to debug this discrepancy between Map and ParallelMap?
It is hard for me to present the actual set of functions that is prompting this question, because it is part of a very large code base. But to summarise, I have a setup like the following:
...
2
votes
2answers
96 views
Solving a diophantine equation in 'large' values
Let's first discuss what I am trying to solve: I want to solve the diophantine equation stated below for relatively 'large' values of $r$.
$$\frac{a(a + 3)(a(r - 9) + (7 - r))}{12}=\frac{b (3 + b (-5 +...
0
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0answers
30 views
ParallelTable - performance problem
I noticed some issue while making parallel computations with Table loop.
I noticed that when one of kernels finishes its part of job, it stops working and only rest of kernels work. But when ...
3
votes
4answers
366 views
Solving an equation in natural numbers
I am trying to solve the following equation in the Natural Numbers, with the condition $a\ge1$, $b\ge1$, and $r\ge3$:
$$\frac{a(a + 3)(a(r - 5) + (12 - r))}{9}=\frac{b (9 + b (-14 + r) - r)}{3}\tag1$$
...
4
votes
2answers
151 views
Finding the number of even numbers in Pascal's triangle (code gives memory error)
I have the following code:
...
1
vote
0answers
67 views
Running NonlinearModelFit in more one kernel simultaneously [closed]
I want to perform a nonlinear least square fit of data points upto 3000. Because the model I provide is huge polynomials with 300 to 400 fitting parameters to be estimated, my mac i7 computer proceeds ...
1
vote
0answers
45 views
What does it mean when $MaxLicenseProcesses returns Infinity?
I am learning how to use Mathematica on a cluster, and a lot of this stuff is still way over my head. Please let me know if I am missing any crucial details.
The cluster uses Linux and uses Lmod to ...
0
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0answers
29 views
Parallel computation in a computer with 2 CPUs
My computer has 2 CPUs, each with 8 cores. However, when using parallel operation, only 8 cores of one CPU can be called. How can I set it so that 8 cores of the other CPU can also participate in the ...
2
votes
1answer
73 views
Implementation of Dirichlet-Neumann method
I am new in Mathematica and I was trying to find documentation on the Dirichlet-Neumann and Neumann-Neumann methods (which are part of Domain Decomposition Method), but I couldn't find any. Can ...
2
votes
0answers
35 views
Mathematica parallelization error
I am trying to parallelize some code in Mathematica 11.3 under Ubuntu 20.04, but I get the following errors:
the code is a s follows:
...
0
votes
1answer
113 views
Writing a program that finds for what $(x,y)$ a function gives a perfect square number
The overal question I am trying to answer is:
For what $(x,y)$, which are positive integers, is the following number a perfect square number?
$$9 \left(x^3 (y-2)^2+3 x^2 (y-2)-2 x (y-45) (y-2)+7 (y-1)^...
