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As discussed and advised in Meta: Migrate a question..., I've copied a 2012 posted question from StackOverflow (posted before this site began running), which has gotten a lot of attention (but after 3 years it just got an answer). Too old to migrate, but the question still seems more suited for this site. @azt who answered in August has offered to to add his answer here.


This relates to an earlier question from 2012 on StackOverflow:

Calculating expectation for a custom distribution in Mathematica

I have a custom mixed distribution defined using a second custom distribution following along the lines discussed by @Sasha in a number of answers over the past year.

Code defining the distributions follows:

nDist /: CharacteristicFunction[nDist[a_, b_, m_, s_], 
   t_] := (a b E^(I m t - (s^2 t^2)/2))/((I a + t) (-I b + t));
nDist /: PDF[nDist[a_, b_, m_, s_], x_] := (1/(2*(a + b)))*a* 
   b*(E^(a*(m + (a*s^2)/2 - x))* Erfc[(m + a*s^2 - x)/(Sqrt[2]*s)] + 
     E^(b*(-m + (b*s^2)/2 + x))* 
      Erfc[(-m + b*s^2 + x)/(Sqrt[2]*s)]); 
nDist /: CDF[nDist[a_, b_, m_, s_], 
   x_] := ((1/(2*(a + b)))*((a + b)*E^(a*x)* 
        Erfc[(m - x)/(Sqrt[2]*s)] - 
       b*E^(a*m + (a^2*s^2)/2)*Erfc[(m + a*s^2 - x)/(Sqrt[2]*s)] + 
       a*E^((-b)*m + (b^2*s^2)/2 + a*x + b*x)*
        Erfc[(-m + b*s^2 + x)/(Sqrt[2]*s)]))/ E^(a*x);         

nDist /: Quantile[nDist[a_, b_, m_, s_], p_] :=  
 Module[{x}, 
   x /. FindRoot[CDF[nDist[a, b, m, s], x] == #, {x, m}] & /@ p] /; 
  VectorQ[p, 0 < # < 1 &]
nDist /: Quantile[nDist[a_, b_, m_, s_], p_] := 
 Module[{x}, x /. FindRoot[CDF[nDist[a, b, m, s], x] == p, {x, m}]] /;
   0 < p < 1
nDist /: Quantile[nDist[a_, b_, m_, s_], p_] := -Infinity /; p == 0
nDist /: Quantile[nDist[a_, b_, m_, s_], p_] := Infinity /; p == 1
nDist /: Mean[nDist[a_, b_, m_, s_]] := 1/a - 1/b + m;
nDist /: Variance[nDist[a_, b_, m_, s_]] := 1/a^2 + 1/b^2 + s^2;
nDist /: StandardDeviation[ nDist[a_, b_, m_, s_]] := 
  Sqrt[ 1/a^2 + 1/b^2 + s^2];
nDist /: DistributionDomain[nDist[a_, b_, m_, s_]] := 
 Interval[{0, Infinity}]
nDist /: DistributionParameterQ[nDist[a_, b_, m_, s_]] := ! 
  TrueQ[Not[Element[{a, b, s, m}, Reals] && a > 0 && b > 0 && s > 0]]
nDist /: DistributionParameterAssumptions[nDist[a_, b_, m_, s_]] := 
 Element[{a, b, s, m}, Reals] && a > 0 && b > 0 && s > 0
nDist /: Random`DistributionVector[nDist[a_, b_, m_, s_], n_, prec_] :=

    RandomVariate[ExponentialDistribution[a], n, 
    WorkingPrecision -> prec] - 
   RandomVariate[ExponentialDistribution[b], n, 
    WorkingPrecision -> prec] + 
   RandomVariate[NormalDistribution[m, s], n, 
    WorkingPrecision -> prec];

(* Fitting: This uses Mean, central moments 2 and 3 and 4th cumulant \
but it often does not provide a solution *)

nDistParam[data_] := Module[{mn, vv, m3, k4, al, be, m, si},
      mn = Mean[data];
      vv = CentralMoment[data, 2];
      m3 = CentralMoment[data, 3];
      k4 = Cumulant[data, 4];
      al = 
    ConditionalExpression[
     Root[864 - 864 m3 #1^3 - 216 k4 #1^4 + 648 m3^2 #1^6 + 
        36 k4^2 #1^8 - 216 m3^3 #1^9 + (-2 k4^3 + 27 m3^4) #1^12 &, 
      2], k4 > Root[-27 m3^4 + 4 #1^3 &, 1]];
      be = ConditionalExpression[

     Root[2 Root[
           864 - 864 m3 #1^3 - 216 k4 #1^4 + 648 m3^2 #1^6 + 
             36 k4^2 #1^8 - 
             216 m3^3 #1^9 + (-2 k4^3 + 27 m3^4) #1^12 &, 
           2]^3 + (-2 + 
           m3 Root[
              864 - 864 m3 #1^3 - 216 k4 #1^4 + 648 m3^2 #1^6 + 
                36 k4^2 #1^8 - 
                216 m3^3 #1^9 + (-2 k4^3 + 27 m3^4) #1^12 &, 
              2]^3) #1^3 &, 1], k4 > Root[-27 m3^4 + 4 #1^3 &, 1]];
      m = mn - 1/al + 1/be;
      si = 
    Sqrt[Abs[-al^-2 - be^-2 + vv ]];(*Ensure positive*)
      {al, 
    be, m, si}];

nDistLL = 
  Compile[{a, b, m, s, {x, _Real, 1}}, 
   Total[Log[
     1/(2 (a + 
           b)) a b (E^(a (m + (a s^2)/2 - x)) Erfc[(m + a s^2 - 
             x)/(Sqrt[2] s)] + 
        E^(b (-m + (b s^2)/2 + x)) Erfc[(-m + b s^2 + 
             x)/(Sqrt[2] s)])]](*, CompilationTarget->"C", 
   RuntimeAttributes->{Listable}, Parallelization->True*)];

nlloglike[data_, a_?NumericQ, b_?NumericQ, m_?NumericQ, s_?NumericQ] := 
  nDistLL[a, b, m, s, data];

nFit[data_] := Module[{a, b, m, s, a0, b0, m0, s0, res},

      (* So far have not found a good way to quickly estimate a and \
b.  Starting assumption is that they both = 2,then m0 ~= 
   Mean and s0 ~= 
   StandardDeviation it seems to work better if a and b are not the \
same at start. *)

   {a0, b0, m0, s0} = nDistParam[data];(*may give Undefined values*)

     If[! (VectorQ[{a0, b0, m0, s0}, NumericQ] && 
       VectorQ[{a0, b0, s0}, # > 0 &]),
            m0 = Mean[data];
            s0 = StandardDeviation[data];
            a0 = 1;
            b0 = 2;];
   res = {a, b, m, s} /. 
     FindMaximum[
       nlloglike[data, Abs[a], Abs[b], m,  
        Abs[s]], {{a, a0}, {b, b0}, {m, m0}, {s, s0}},
               Method -> "PrincipalAxis"][[2]];
      {Abs[res[[1]]], Abs[res[[2]]], res[[3]], Abs[res[[4]]]}];

nFit[data_, {a0_, b0_, m0_, s0_}] := Module[{a, b, m, s, res},
      res = {a, b, m, s} /. 
     FindMaximum[
       nlloglike[data, Abs[a], Abs[b], m, 
        Abs[s]], {{a, a0}, {b, b0}, {m, m0}, {s, s0}},
               Method -> "PrincipalAxis"][[2]];
      {Abs[res[[1]]], Abs[res[[2]]], res[[3]], Abs[res[[4]]]}];

dDist /: PDF[dDist[a_, b_, m_, s_], x_] := 
  PDF[nDist[a, b, m, s], Log[x]]/x;
dDist /: CDF[dDist[a_, b_, m_, s_], x_] := 
  CDF[nDist[a, b, m, s], Log[x]];
dDist /: EstimatedDistribution[data_, dDist[a_, b_, m_, s_]] := 
  dDist[Sequence @@ nFit[Log[data]]];
dDist /: EstimatedDistribution[data_, 
   dDist[a_, b_, m_, 
    s_], {{a_, a0_}, {b_, b0_}, {m_, m0_}, {s_, s0_}}] := 
  dDist[Sequence @@ nFit[Log[data], {a0, b0, m0, s0}]];
dDist /: Quantile[dDist[a_, b_, m_, s_], p_] := 
 Module[{x}, x /. FindRoot[CDF[dDist[a, b, m, s], x] == p, {x, s}]] /;
   0 < p < 1
dDist /: Quantile[dDist[a_, b_, m_, s_], p_] :=  
 Module[{x}, 
   x /. FindRoot[ CDF[dDist[a, b, m, s], x] == #, {x, s}] & /@ p] /; 
  VectorQ[p, 0 < # < 1 &]
dDist /: Quantile[dDist[a_, b_, m_, s_], p_] := -Infinity /; p == 0
dDist /: Quantile[dDist[a_, b_, m_, s_], p_] := Infinity /; p == 1
dDist /: DistributionDomain[dDist[a_, b_, m_, s_]] := 
 Interval[{0, Infinity}]
dDist /: DistributionParameterQ[dDist[a_, b_, m_, s_]] := ! 
  TrueQ[Not[Element[{a, b, s, m}, Reals] && a > 0 && b > 0 && s > 0]]
dDist /: DistributionParameterAssumptions[dDist[a_, b_, m_, s_]] := 
 Element[{a, b, s, m}, Reals] && a > 0 && b > 0 && s > 0
dDist /: Random`DistributionVector[dDist[a_, b_, m_, s_], n_, prec_] :=
   Exp[RandomVariate[ExponentialDistribution[a], n, 
     WorkingPrecision -> prec] - 
       RandomVariate[ExponentialDistribution[b], n, 
     WorkingPrecision -> prec] + 
    RandomVariate[NormalDistribution[m, s], n, 
     WorkingPrecision -> prec]];

This enables me to fit distribution parameters and generate PDF's and CDF's. An example of the plots:

Plot[PDF[dDist[3.77, 1.34, -2.65, 0.40], x], {x, 0, .3}, 
 PlotRange -> All]
Plot[CDF[dDist[3.77, 1.34, -2.65, 0.40], x], {x, 0, .3}, 
 PlotRange -> All]

enter image description here

Now I've defined a function to calculate mean residual life (see this question for an explanation).

MeanResidualLife[start_, dist_] := 
 NExpectation[X \[Conditioned] X > start, X \[Distributed] dist] - 
  start
MeanResidualLife[start_, limit_, dist_] := 
 NExpectation[X \[Conditioned] start <= X <= limit, 
   X \[Distributed] dist] - start

The first of these that doesn't set a limit as in the second takes a long time to calculate, but they both work.

Now I need to find the minimum of the MeanResidualLife function for the same distribution (or some variation of it) or minimize it.

I've tried a number of variations on this:

FindMinimum[MeanResidualLife[x, dDist[3.77, 1.34, -2.65, 0.40]], x]
FindMinimum[MeanResidualLife[x, 1, dDist[3.77, 1.34, -2.65, 0.40]], x]

NMinimize[{MeanResidualLife[x, dDist[3.77, 1.34, -2.65, 0.40]], 
  0 <= x <= 1}, x]
NMinimize[{MeanResidualLife[x, 1, dDist[3.77, 1.34, -2.65, 0.40]], 0 <= x <= 1}, x]

These either seem to run forever or run into:

Power::infy : Infinite expression 1/ 0. encountered. >>

The MeanResidualLife function applied to a simpler but similarly shaped distribution shows that it has a single minimum:

Plot[PDF[LogNormalDistribution[1.75, 0.65], x], {x, 0, 30}, 
 PlotRange -> All]
Plot[MeanResidualLife[x, LogNormalDistribution[1.75, 0.65]], {x, 0, 
  30},
 PlotRange -> {{0, 30}, {4.5, 8}}]

enter image description here

Also both:

FindMinimum[MeanResidualLife[x, LogNormalDistribution[1.75, 0.65]], x]
FindMinimum[MeanResidualLife[x, 30, LogNormalDistribution[1.75, 0.65]], x]

give me answers (if with a bunch of messages first) when used with the LogNormalDistribution.

Any thoughts on how to get this to work for the custom distribution described above?

Do I need to add constraints or options?

Do I need to define something else in the definitions of the custom distributions?

Maybe the FindMinimum or NMinimize just need to run longer (I've run them nearly an hour to no avail). If so do I just need some way to speed up finding the minimum of the function? Any suggestions on how?

Does Mathematica have another way to do this?

Thanks in advance!

Added 9 Feb 5:50PM EST:

Anyone can download Oleksandr Pavlyk's presentation about creating distributions in Mathematica from the Wolfram Technology Conference 2011 workshop 'Create Your Own Distribution' here. The downloads include the notebook, 'ExampleOfParametricDistribution.nb' that seems to lays out all the pieces required to create a distribution that one can use like the distributions that come with Mathematica.

It may supply some of the answer.

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  • $\begingroup$ @azt -- You're up. Thanks again. $\endgroup$
    – Jagra
    Commented Sep 9, 2015 at 13:34
  • $\begingroup$ Jagra, azt did not get a ping from your comment above (see this SE meta post for how pings work); you will want to ping them from the Meta discussion in which they participated. $\endgroup$
    – MarcoB
    Commented Sep 9, 2015 at 15:39
  • $\begingroup$ @MarcoB - Thanks for the head's up. $\endgroup$
    – Jagra
    Commented Sep 9, 2015 at 17:22
  • $\begingroup$ @Jagra, here it is. Have you had time to go through my answer? Maybe we should put a comment on SO that the copy is now here... $\endgroup$
    – azt
    Commented Sep 9, 2015 at 17:58
  • $\begingroup$ @azt -- Not certain of the protocol for informing SO, perhaps one of our moderators can advise. And now I need to dig into your answer... $\endgroup$
    – Jagra
    Commented Sep 9, 2015 at 21:14

1 Answer 1

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As far as I see, the problem is (as you already wrote), that MeanResidualLife takes a long time to compute, even for a single evaluation. Now, the FindMinimum or similar functions try to find a minimum to the function. Finding a minimum requires either to set the first derivative of the function zero and solve for a solution. Since your function is quite complicated (and probably not differentiable), the second possibility is to do a numerical minimization, which requires many evaluations of your function. Ergo, it is very very slow.

I'd suggest to try it without Mathematica magic.

First let's see what the MeanResidualLife is, as you defined it. NExpectation or Expectation compute the expected value. For the expected value, we only need the PDF of your distribution. Let's extract it from your definition above into simple functions:

pdf[a_, b_, m_, s_, x_] := (1/(2*(a + b)))*a*b*
    (E^(a*(m + (a*s^2)/2 - x))*Erfc[(m + a*s^2 - x)/(Sqrt[2]*s)] + 
    E^(b*(-m + (b*s^2)/2 + x))*Erfc[(-m + b*s^2 + x)/(Sqrt[2]*s)])
pdf2[a_, b_, m_, s_, x_] := pdf[a, b, m, s, Log[x]]/x;

If we plot pdf2 it looks exactly as your Plot

Plot[pdf2[3.77, 1.34, -2.65, 0.40, x], {x, 0, .3}]

Plot of PDF

Now to the expected value. If I understand it correctly we have to integrate x * pdf[x] from -inf to +inf for a normal expected value.

x * pdf[x] looks like

Plot[pdf2[3.77, 1.34, -2.65, 0.40, x]*x, {x, 0, .3}, PlotRange -> All]

Plot of x * PDF

and the expected value is

NIntegrate[pdf2[3.77, 1.34, -2.65, 0.40, x]*x, {x, 0, \[Infinity]}]
Out= 0.0596504

But since you want the expected value between a start and +inf we need to integrate in this range, and since the PDF then no longer integrates to 1 in this smaller interval, I guess we have to normalize the result be dividing by the integral of the PDF in this range. So my guess for the left-bound expected value is

expVal[start_] := 
    NIntegrate[pdf2[3.77, 1.34, -2.65, 0.40, x]*x, {x, start, \[Infinity]}]/
    NIntegrate[pdf2[3.77, 1.34, -2.65, 0.40, x], {x, start, \[Infinity]}]

And for the MeanResidualLife you subtract start from it, giving

MRL[start_] := expVal[start] - start

Which plots as

Plot[MRL[start], {start, 0, 0.3}, PlotRange -> {0, All}]

Plot of Mean Residual Life

Looks plausible, but I'm no expert. So finally we want to minimize it, i.e. find the start for which this function is a local minimum. The minimum seems to be around 0.05, but let's find a more exact value starting from that guess

FindMinimum[MRL[start], {start, 0.05}]

and after some errors (your function is not defined below 0, so I guess the minimizer pokes a little in that forbidden region) we get

{0.0418137, {start -> 0.0584312}}

So the optimum should be at start = 0.0584312 with a mean residual life of 0.0418137.

I don't know if this is correct, but it seems plausible.

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