Did you try using assumptions? Using assumptions with version 10.0.0, I get the same results as with version 10.0.2
$Version
"10.0 for Mac OS X x86 (64-bit) (June 29, 2014)"
Clear[f]
f[n_Integer] = Integrate[HermiteH[n, x]*Exp[-x^2], {x, 0, Infinity},
Assumptions -> {Element[n, Integers]}]
(2^(-1 + n)*Sqrt[Pi])/Gamma[1 - n/2]
Integrate[HermiteH[n, x]*Exp[-x^2], {x, 0, Infinity}]
ConditionalExpression[ (2^n*(-2 + n)Sqrt[Pi]
Hypergeometric2F1[1, (1 - n)/2,
1/2, 1])/(n*Gamma[-(n/2)]), NotElement[n, Integers] &&
Re[n] > 0]
However, assuming the stated conditions gives the same result as the integer case
f[n_] = Integrate[HermiteH[n, x]*Exp[-x^2], {x, 0, Infinity},
Assumptions -> {NotElement[n, Integers] && Re[n] > 0}]
(2^(-1 + n)*Sqrt[Pi])/Gamma[1 - n/2]
Combining the results
Clear[f]
f[n_] = (2^(-1 + n)*Sqrt[Pi])/Gamma[1 - n/2];
Simplify[f[2 n], {Element[n, Integers], n > 0}] // Quiet
0
Show[
Plot[f[n], {n, -5, 5}, PlotRange -> All],
DiscretePlot[f[n], {n, -5, 5}]]

Table[{n, f[n]}, {n, -5, 50}]
{{-5, 1/120}, {-4, Sqrt[Pi]/64}, {-3, 1/12}, {-2, Sqrt[Pi]/8},
{-1, 1/2}, {0, Sqrt[Pi]/2}, {1, 1}, {2, 0}, {3, -2}, {4, 0},
{5, 12}, {6, 0}, {7, -120}, {8, 0}, {9, 1680}, {10, 0}, {11,
-30240}, {12, 0}, {13, 665280}, {14, 0}, {15, -17297280}, {16, 0}, {17, 518918400}, {18, 0}, {19, -17643225600}, {20, 0},
{21, 670442572800}, {22, 0}, {23, -28158588057600}, {24, 0},
{25, 1295295050649600}, {26, 0}, {27, -64764752532480000},
{28, 0}, {29,
3497296636753920000}, {30, 0}, {31, -202843204931727360000}, {32, 0}, {33,
12576278705767096320000}, {34, 0}, {35,
-830034394580628357120000}, {36, 0}, {37,
58102407620643984998400000}, {38, 0}, {39,
-4299578163927654889881600000}, {40, 0}, {41,
335367096786357081410764800000}, {42, 0}, {43,
-2750010193648128067568271360000\
0}, {44, 0}, {45,
23650087665373901381087133696000\ 00}, {46, 0}, {47, -212850788988365\
112429784203264000000}, {48, 0}, {49, 2000797416490632056839971510\ 6816000000}, {50, 0}}