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I think I'm experiencing a bug, but perhaps there is a simple explanation and fix.

I have many initialization cells in my notebook (a few hundred). As of quite recently, they stopped all evaluating when I execute "Evaluate Initialization Cells". Some do, but some don't—I haven't yet detected any pattern. I can tell when they don't evaluate because, on top of the code not working correctly, I can still see In[•] next to the cell after "Evaluate Initialization Cells" is complete. But such cells are still grayed out and when I right-click their side panel, the "Initialization Cell" option is checked off.

Any ideas what could be going on? Is this definitely a bug? This might have begun recently after I had to force-quit Mathematica while it was stuck in a loop.

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    $\begingroup$ Can you copy the cell expression (Cell | Show Expression from the menu) of a cell that didn't evaluate, and include it in your question? $\endgroup$
    – Carl Woll
    Commented Oct 15, 2021 at 22:52

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Click on Evaluation/Restart Session and try evaluating again.

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