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Grid[ArrayReshape[ Item[#, Background ->  If[FreeQ[IntegerDigits@#, 3], White, Yellow]] & /@  Range@1000, {34, 30}], Dividers -> All] Export["1000-3.pdf", %]

The Grid looks fine on the screen in MMA. But when exported, it became this

enter image description here

The rest of the cells are all good part from the "fat" 1000.

enter image description here

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Easy with ItemSize:

gr = Grid[ArrayReshape[Item[#, Background -> If[FreeQ[IntegerDigits@#, 3], White, Yellow]] 
& /@ Range@1000, {34, 30}], Dividers -> All, ItemSize -> All]; 
Export["1000-3.pdf", gr]
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Evaluating

SetOptions[$FrontEnd, LineBreakWithin -> False]

before your export should prevent automatic line breaking.

chart

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