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You can try setting the system property from the Java code with the following: nativePath = "/Applications/Mathematica.app/SystemFiles/Links/JLink/SystemFiles/Libraries/MacOSX-x86-64/"; System.setProperty("java.library.path",nativePath); Make sure you use the mathching version of JLink native library and JRE. On some systems such as Mac OS X the JRE may ...

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