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The problem seems to be when the label is rotated. Check this: Export["test.pdf", ListPlot[{1, 2, 3}, Joined -> False, Frame -> True, FrameLabel -> {Rotate["\!\(\*SqrtBox[\(x\)]\)", \[Pi]/2], "\!\(\*SqrtBox[\(y\)]\)"}]] however if you accept unrotated label, you can use: Export["test.pdf", ListPlot[{1, 2, 3}, Joined -> False, ...



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