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On my Ubuntu 15.04 system Mathematica 10.2 does pick up the system settings for scaling. I can go to System Settings -> Display, adjust the scaling with the slider there, restart Mathematica, and its fonts will be adjusted just like all other applications.


Well I solved it this way: Go to: /usr/local/Wolfram/Mathematica/9.0/SystemFiles/FrontEnd/SystemResources/X/ (or wherever your local mathematica installation is located) From there move the 32x32, 64x64 and 128x128 .png icon files into the respective /usr/share/icons/hicolor/32x32/apps /usr/share/icons/hicolor/64x64/apps ...

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