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The only solution I have found is to delete the contents of the directory given by: FileNameJoin[{$UserBaseDirectory, "Paclets"}] More specifically it appears to be sufficient to delete a single file: FileNameJoin[{$UserBaseDirectory, "Paclets", "Configuration", "pacletSiteData_10.pmd2"}] To prevent Mathematica freezing on the next start-up I need to ...

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