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Here is an answer using a small amount of the two example data files you supplied. Read the first 4 lines of each file: h = Import[#][[1 ;; 4, {1, 4}]] & /@ FileNames["/SampleData/Heat*"]; Transpose, flatten and export the data: Export["/SampleData/heatcombarrayex.csv", Flatten/@Transpose@h] The issue you were having is that when you transpose ...

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