Questions about optimizing code for faster results, or how to do faster computations.

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5
votes
2answers
201 views

Parallelizing or optimizing a script for calculating the size of all pairwise intersections between collections of sets

I need to speed up or parallelize an operation that looks essentially like this: ...
4
votes
2answers
258 views

Quickly reducing the number of decimal digits for a set of real numbers

How can I quickly convert a number with $n$ decimal points to a number of with $m$ decimal points? Round works, however, it is slower than I would like. This ...
6
votes
1answer
127 views

Why LinearModelFit is slower than NonlinearModelFit?

Why LinearModelFit is slower than NonlinearModelFit? ...
8
votes
1answer
176 views

Why is building a table of function values so much slower than just plotting the function?

Here is a function that take some time to evaluate: n = 1000; coeffs = RandomVariate[NormalDistribution[], n]; f[x_] := Sum[coeffs[[k]] Sin[k x]/k, {k, 1, n}]; ...
1
vote
0answers
139 views

Is there a way to speed up Simplify and/or PolynomialReduce Modulus-> 2?

I'm trying to simplify a series of equations with at most 64 input terms. As the number of terms involved in the equations increase, the runtime seems to grow exponentially. Does anyone know of ways ...
4
votes
5answers
327 views

How to generalize and speed up this program?

There is a vector whose length is $n*m$, we can part it into $n$ sections in order. I want to define a function to compare the $i$-th and $i+1$-th section and find the minimum. The program for $n=m=3$ ...
2
votes
2answers
180 views

Time differences between code using user-defined probability distribution and code using built-in distribution

Why is the reponse time of of kernel significantly different when I use the first code rather than the second? Shouldn it not be the same? Is there any way that the response time can be made smaller ...
1
vote
1answer
114 views

What is the best way to produce a symmetric semi-definite matrix using as few variables as possible?

As we know, there are only $\frac{n(n+1)}{2}$ variables in a symmetric $n$-dimensional semi-definite matrix. Is it possible to produce a $n$-dimensional semi-definite matrix whose trace is $1$ using ...
1
vote
2answers
169 views

How can I speed up this plot manipulation? Why does Evaluate not help?

If I were able to "Save" the computed inverse function somewhere and then plot it, the manipulation would become faster. As I understand, Evaluate should do the job, but for some reason it does not. ...
4
votes
1answer
301 views

Why is parallel slower?

I always assumed that distributing a computation is faster, but it isn't necessarily true. When I do Sum[i,{i,10^4}] I retrieve an answer much faster then if I do ...
8
votes
4answers
417 views

NIntegrate extremely piecewised functions

I often need to integrate extremely piecewised functions, like the following one (not extreme, but gives an idea): ...
2
votes
0answers
108 views

Frontend cursor movement speed depends on the position in large notebook file

I run Mathematica v9 on my Atom laptop (don't ask) and I got used to the fact that everything is slower. Except for one annoying thing: cursor movement (in text) is slower than the keyboard key repeat ...
8
votes
1answer
616 views

Integration strategies for oscillatory multidimensional function

I am seeking to integrate a highly oscillatory, multidimensional function. I am currently using NIntegrate's QuasiMonteCarlo approach. However, this is time-consuming and, given my current resources, ...
0
votes
0answers
301 views

Performance in parameter estimation from ParametricNDSolve using varied initial conditions

I have 250 data points from a timecourse exeriment in a list, with columns specifying (1) time, (2-4) initial conditions, (5) absorbance reading. I want to fit 4 parameters (k1, k2, k3, k4) in a DAE ...
4
votes
4answers
432 views

Remove linear trend from data

I have a large data set with 150k lines and two data columns. I noticed that there is a linear trend, which I want to remove. So, I do the following: first fit with a linear model ...
2
votes
3answers
202 views

Speeding up a simple simulation with random extractions

I wonder if anybody can help, I need a hand with a simple simulation I am writing with Mathematica (I am using version 8). Basically it creates a list (called l) with numbers from 1 to n and a random ...
2
votes
0answers
201 views

Project Euler (memory and speed issues)

Let n be a positive integer. An integer triple (a, b, c) is called a factorisation triple of n if: 1 ≤ a ≤ b ≤ c a·b·c = n. Define f(n) to be a + b + c for the factorisation triple (a, b, c) of n ...
7
votes
5answers
378 views

Efficiently finding the positions of a large list of targets in another, even larger list

I have a big list. It contains nearly 60,000 sub-lists. It's structured like bigList = {{x1,y1,z1},{x2,y2,z2},{x3,y3,z3},.....,{x60000,y60000,z60000}}; I have ...
0
votes
1answer
166 views

Alleviating a bottleneck involving a function call with symbolic derivatives

I have a bottleneck problem involving a function call with symbolic derivatives. I don't have much experience with Mathematica (or any dynamic language) and I'm certain that the way I've set this up ...
2
votes
1answer
172 views

EmpiricalDistribution for Gini Coefficient Runs Slow

I am repurposing code that I found in this blog post (http://datavoreconsulting.com/sports/gini-coefficients-and-the-olympic-medal-race/) to generate the Gini coefficient for other data sets I am ...
1
vote
1answer
286 views

Speeding up code by avoiding repeated evaluation of a function

I want to speed up my code and I have two ideas, but I don't know how I can implement them. Here is a little part of my code, which I want to improve: ...
1
vote
0answers
642 views

Speed up Numerical Integration

EDIT: I need to evaluate a very complicated multi-dimensional Integral. The dimension of the Integral depends on a variable j. Let's make my point clear with the ...
5
votes
1answer
497 views

symbolic integration of a definite integral, how to speed up

I am wondering what are the general tips & hints for speeding up symbolic integration. As far as I understand, it solely depends on the form a function is represented before it is processed by ...
5
votes
1answer
400 views

Random number generation with specific distribution

I am writing a program for solving the shortest path in travelling salesman problem, with a twist that there are multiple salesmen who partition the cities among themselves, thus creating two part ...
6
votes
2answers
304 views

Use of Cellular Automaton or Discrete Convolution to calculate Potts Energy of a 2D Matrix

In a project of Monte Carlo Modelling of Grain Growth (Link) one of the most costly subroutines is the calculation of the Potts-Energy of an Monte Carlo Grid cell by comparing the center cell value ...
11
votes
2answers
495 views

Fast Simulations with Compile

this post relates to another post that I didn't follow up propely. If I wanted to simulate a system of stochastic proesses like the following, and loop over this run many many times would writing the ...
9
votes
2answers
1k views

Convolution with interpolated function

I have some problems to calculate in reasonable speed the convolution of an interpolated function with a Gauss function. I have here (ExampleData.txt, alternate Pastebin link) data which I ...
14
votes
2answers
595 views

How can I speed up the classic GA for graph coloring?

I'm trying to compute the chromatic number of this graph (which is 28): g = Import@"http://www.info.univ-angers.fr/pub/porumbel/graphs/dsjc250.5.col"; My genetic ...
9
votes
3answers
379 views

Why is AstronomicalData so slow?

I'm having trouble getting some pretty simple functions using AstronomicalData to perform at anywhere near the speed I need them to. For example, I have many ...
3
votes
1answer
1k views

Improving NDSolve speed for heavily stiff problems

Having looked around the intergoogles and Mathematica.SE, I thought I'd pose a question with a minimum working example. Here is the situation I am trying to improve: I am solving a 4th order non ...
4
votes
2answers
334 views

How to speed up drawing a tangent plane?

I have this code to produce an interactive visualization of a tangent plane to a function: ...
20
votes
2answers
1k views

How to quickly calculate intersections of filled curves?

I am trying to quickly calculate the intersection of polygons with more than 6,000 points. A compiled solution would be preferable. Here is one example of the problem: ...
10
votes
1answer
680 views

Is there a simple example using OpenCLLink that shows performance advantages?

OpenCLLink allows Mathematica to use the OpenCL parallel computing language. I have done some tests on simple examples, but so far, the CPU regularly outperforms ...
2
votes
1answer
214 views

Why is LogLogPlot[] slower than Plot[]?

I notice that LogLogPlot runs quite bit more slowly than ordinary Plot. For example, consider the following two blocks of code ...
9
votes
4answers
286 views

How can I efficiently check if a graph is unit distance?

A unit distance graph is a graph that is embeddable in the plane so that every edge has length 1. ...
23
votes
4answers
1k views

What is the fastest way to count square-free words?

Background A word is a string of letters in an alphabet. A square-free word has no adjacent repeating substring. For example, (in the ternary alphabet of {0,1,2}) the words 00, 012121, and 0212012021 ...