Questions on optimizing Mathematica code for higher performance. This may mean faster execution, lower memory usage or both. Not to be confused with mathematical optimization.

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3
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0answers
78 views

How to speed up solution of system of recurrence equations

I was wondering how I can improve the speed on this method for solving a particular system of coupled recurrence equations. The system is $$ \begin{align*} &V(m)=\alpha + \beta V(m+1)+\beta ...
2
votes
0answers
86 views

Optimization of custom probability distibutions?

Consider the two tests: Timing[Do[RandomVariate[NormalDistribution[0.5, 0.3]], {200}]] {0.001188, Null} ...
1
vote
2answers
135 views
3
votes
1answer
97 views

Faster variant of Reduce for finding zeros of holomorphic functions in a region

I'm currently using Reduce to find zeros of a function in a region on a complex plane: ...
8
votes
4answers
161 views

ImageApply Performance Difference

How come the timing difference between these calls is so big? (0.2 and 39 seconds on my computer) ImageApply[q3, img] ImageApply[q3[#] &, img] Where ...
1
vote
1answer
129 views

Improving Performance - Finding Polynomial Roots [duplicate]

I'm fairly new to Mathematica. In the past, my usage has mostly been limited to solving the occasional equation, making some plots, and working with small scaled statistics. None of these have been ...
12
votes
2answers
201 views

Faster trimming of leading/trailing zeroes in rectangular array

Given a (large) rectangular array, e.g. (small for example case): ...
12
votes
2answers
206 views

why MeanFilter is nearly 100 times slower than MovingAverage for 1D array?

I used to average over my data with MeanFilter before I learn about MovingAverage and thought that these two functions are similar except that MeanFilter is more powerful for its ability to deal with ...
1
vote
1answer
68 views

Speeding up EPS exporting ?

I'm using Mathematica 10 to render some figures, and I'm noticing some strange behaviour with EPS figures. I'm making figures like the one below in EPS format. And to do so, I use some code like ...
6
votes
2answers
442 views

Efficient way to perform local Otsu thresholding on image

I have images of cell nuclei that have locally varying intensity distributions. Therefore, I need a robust local threshold algorithm. LocalAdaptiveBinarize works ...
11
votes
5answers
425 views

Most efficient way of making pair list from a list

I have a bunch of datasets which looks like: 3 7 1 6 5 8 2 4 1 2 8 1 5 2 5 ... and I need to make a list of pairs such that the first element makes a pair with ...
1
vote
0answers
134 views

How can I speed up this NM optimization? Most delay seems to be due to long analytic expression

I am struggling with computational speed of a NelderMead optimization. Nevertheless my impression is that I lose lots of speed not only due to the NM optimization itself but rather to for instance ...
-1
votes
1answer
91 views

Looping within linear programming

I am trying to do some network programming around optimization. Here is a reduced sample: ...
0
votes
0answers
77 views

Optimising prime number test code

Is it possible to speed-up this code ? Also, It would be great if people could test this algorithm. I only have a Raspberry Pi to test it on, so I can't be certain it's not a strong probable prime ...
6
votes
1answer
152 views

StreamPlot slow in version 10

In version, 10 StreamPlot seems to calculate many more points along each streamline than necessary, compared to version 7. For example, from Mathematica ...
9
votes
3answers
280 views

How to speed up auxilary DoolittleDecomposite function?

The Doolittle Decomposition algorithm as below: $$A=LU$$ where $A= \begin{pmatrix} a_{11} & a_{12} & \cdots a_{1n}\\ a_{21} & a_{22} & \cdots a_{2n}\\ \vdots & \vdots & \vdots ...
3
votes
1answer
120 views

speeding up creation of SparseArray

I have to create the following sparse arrays, which are reshaped in a two dimensional matrix, so that i can use the build in Dot[] function to do a kind of ...
1
vote
0answers
54 views

Speeding Up the Numerical Integration of a Product of Numerical Integrands with NIntegrate

I need to solve a set of coupled integral equations within a self-consistent cycle. The final result will be functions, say $A(x)$ and $B(x)$, which are related to each other by some integrals which ...
8
votes
1answer
91 views

DatePlus and DayPlus perform much worse than my user-defined-function

I was debugging a function speed, and discovered that the time bottleneck was in DatePlus. I tried to change to DayPlus and get ...
9
votes
2answers
290 views

Relaxation of Mass-Spring System with Pinned Masses

Problem Assume that four masses are connected to each other by springs while two of them are pinned down at their initial positions. Find the position of masses when system is at its minimum ...
8
votes
3answers
188 views

How can I generate a $2n$-point moving maximum of a list as efficiently as MaxFilter?

This is based on the prior question, Moving maximum function?, where @rasher provided two winning solutions (i.e. clearly the most efficient): MaxFilter[list, 1] ...
13
votes
1answer
201 views

Unexpected slowness checking for empty list?

I thought I had a firm understanding of the differences between Equal and SameQ, but this has me puzzled: ...
3
votes
1answer
166 views

How to accelerate my code?

Given a 2D $M \times N$ matrix with non-negative values, I would like to find a path going from top to bottom such that the sum of the path is minimum. My function is defined as follow: ...
4
votes
1answer
355 views

Very slow mathematica finite differences

I have a simple code which solves an equation by an explicit method (FTCS). It takes mathematica several minutes (mathematica 10.0.2) to finish the calculation while the same code in Fortran runs less ...
2
votes
2answers
327 views

NIntegrate over a list of functions

This question is the result of these other two questions. Question 1 and 2. I thought it would be better to ask a new question rather than deleting previous one. I think When ...
2
votes
0answers
34 views

What is the most efficient method to find a single eigenvector with eigenvalue that is numerically 0?

I need to find an eigenvector of a (numerically calculated) square matrix M corresponding to the eigenvalue 0. The methods I know are ...
25
votes
7answers
753 views

Faster position list construction from a “take instructions” list

Take some list, e.g., {1,2,3,4,5}, and a "take instructions" list, say {1,1,2,1,1}. The latter is read as "take the first ...
1
vote
0answers
186 views

Collision detection algorithm (discrete) with sweep and prune algorithm for periodic boundary conditions

EDIT: Question Updated with solution approach, but solution much slower than original implementation. Any ideas to speed up implementation? In the discussion on collision detection (see here) I asked ...
5
votes
1answer
208 views

Slow exponential evaluation over lists

This question,which is still unanswered, might be relevant because it involves NIntegrate over lists and it also has Exp. In ...
6
votes
1answer
214 views

How to get probabilities for multinomial & hypergeometric distribution ranges more quickly?

I often need to calculate the probability of a result from a multinomial distribution falling within some range, e.g., the maximum of the categories having an upper bound, or a lower bound for the ...
3
votes
0answers
82 views

Decrease computation time of module [closed]

I need to compute the exponential of a matrix (in this caseR) by the summation method where R is a square matrix with symbolic ...
1
vote
1answer
272 views

Slow evaluation of NIntegrate when used as a pure function

I asked a perhaps related question here. Here is my code in below. The goal is that to define a function which must be integrated numerically. The function itself first is calculated over different ...
4
votes
2answers
232 views

Finding large Collatz Sequences, trying to improve speed

Background: I am already very much in love with Mathematica but I am also a novice. So far I have only gathered experience in procedural programming in Python. Generally speaking I am trying to ...
0
votes
1answer
117 views

Animating a Large Graphic Aborts, but Dynamic Works Fine

I'm trying to animate a large Graphics output, and it is returning $Aborted. I'm confused because when I use Dynamic and Slider, the graphics output is exactly what I want, i.e., I can 'animate' the ...
15
votes
1answer
210 views

Major slowdown when using a ColorFunction with more than one named scheme

Problem remains in 10.1 Earlier Kuba noted a major slowdown with code Simon Woods posted. Here is a simplified example. First a color function using two different named gradient schemes: ...
0
votes
0answers
67 views

Improve performance of processing transactions in a large file

I want to work with a table which has 296,705 transactionslines and 172,147 transactions. ...
2
votes
3answers
296 views

Finding minimum of a list of pairs

Sometimes I need to find the Min of a list, whose elements are lists (say of two elements, a pair). Given that Min does not have the option to indicate a sorting function like Sort, I elaborated the ...
1
vote
1answer
74 views

Performance problem with summation in Mathematica

I was trying to find out why the following function is rather slow. ...
0
votes
0answers
141 views

Run out of memory. How to optimize this code?

I have two sets of data: short with 22 entries, long with 46 entries. I want to take 20 entries from ...
5
votes
1answer
196 views

Functional-programming virus infection

Update: The question may seem too broad, but the answer provided by belisarius responds perfectly to the question, as the use of $ListConvolve$ and $NestList$ meets the desired criteria in in addition ...
1
vote
1answer
55 views

Let's do this list-rearrangement prettier [duplicate]

Suppose that i have a list in this format= $list=\{ \{a,obj1 \} ,\{c,obj2 \}, \{a,obj3 \}, \{b,obj4 \} \dots\}$ I want to construct a new list in this way: $ newlist= \{ \{ \{a,obj1\} , \{a,obj3\} ...
5
votes
1answer
263 views

Slow-down encountered when using NMinimize with a compiled function

I'm minimizing a large function. Evaluating the function is very slow symbolically but using Compile I can get ~100x speed-up on this step. However, despite this, the NMinimize process is only ...
0
votes
0answers
371 views

Low CPU usage. How to increase it? Should I? [duplicate]

I'm running a programme, and below are some graphics from the resources monitor from windows 8, while running my programme in version 9 of mathematica. Sorry for the foreign writings in the pics, but ...
0
votes
1answer
71 views

How to speed up ReplaceAll in Table?

I am writing a code which solve a list of equations and then create a Table with resulst of equation solving. In applications where I use this code, I create a bunch of equations and my computations ...
15
votes
1answer
285 views

The efficiency compare between Flatten[#, 1] & and Join @@ # &

Err..Often I met the situation to join lists at the first level and I used to just Flatten[#, 1] &@ them. However, I found(when glance over the mathematica.stackexchange.com) someone else prefer ...
3
votes
2answers
94 views

Slow application of `Outer` on a matrix

I have some performance issue with the calculation of a gaussian kernel applied to a not-that-large dataset. I'm not very good with performance tuning in Mma and I have the feeling this one could be ...
10
votes
0answers
184 views

Efficient image stacking

I have a list of lists of images that I would like to stack and create mean images for each list of images. Images are .jpg files 2592x1944 pixels large. Each list ...
16
votes
3answers
2k views

Can Mathematica's random number generation be improved?

Performance on Random Number generation is intolerable. Whenever you need many deviates from the same distribution but with different parameters it takes forever. Here is a thread on Poisson ...
3
votes
2answers
135 views

How do I apply a ColorDataFunction[] to a grayscale image? [duplicate]

Suppose I have a 2D array im of real values between 0 and 1, representing a grayscale image. I can turn im into an image very ...
7
votes
2answers
1k views

Dramatic speed difference of code on Matlab and Mathematica

Background: I was trying to convert a Matlab code (fluid simulation, SPH method) into a Mathematica one, but the speed difference is huge. Matlab code: ...