Questions on optimizing Mathematica code for higher performance. This may mean faster execution, lower memory usage or both. Not to be confused with mathematical optimization.

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2
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1answer
605 views

Speeding up a slow indefinite integral

I have found an alternative way to express an old solution: ...
2
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3answers
140 views

Finding minimum of a list of pairs

Sometimes I need to find the Min of a list, whose elements are lists (say of two elements, a pair). Given that Min does not have the option to indicate a sorting function like Sort, I elaborated the ...
2
votes
3answers
151 views

Efficient matrix multiplication

I have a list of vectors vecs = {vec1, vec2, ..., vecN} where veci is a list with length $N$. Now I have a matrix $N\times N$ ...
2
votes
1answer
490 views

How to solve simultaneous equations faster with Compile?

I have large 6x6 matrix Uwhich is a multiplication of 15 rotational matrix. All of the elements are Sin\[theta] and ...
2
votes
2answers
353 views

Combining lists with common elements efficiently [duplicate]

Possible Duplicate: Computing the equivalence classes of the symmetric transitive closure of a relation I am required to process sets consisting of 2-element subsets of integers by ...
2
votes
3answers
88 views

Efficiently plotting a function with its translates?

How does one efficiently produce a plot of {f[x], f[x]+1}? Assume that f[x] is a long computation, which I would like to avoid ...
2
votes
1answer
137 views

Neighbourhood - Calculations

SeedRandom[0]; n = 5; (m = N @ RandomInteger[{1, 3}, {n, n}]) // MatrixForm result1 = MeanFilter[m, 1] // MatrixForm ...
2
votes
2answers
156 views

Speeding up the generation of all k-edge-coloring of a graph

A $k$-edge-coloring of a graph $G=(V,E)$ is a function from $E$ to $\{1,\ldots,k\}$, so in other words every edge of $G$ receives one of the $k$ colors available. (In particular, note that we are not ...
2
votes
3answers
132 views

Can you compute more terms in this sequence?

I am trying to identify a sequence related to the von Mangoldt function matrix. Since I believe/conjecture that the columns in the matrix have period lengths as in this sequence b: ...
2
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1answer
80 views

Faster way to extract partial data from AdjacencyMatrix

I am dealing with a lot of Graph objects. One task is to obtain an Id for each of them. So I first used ...
2
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3answers
83 views

Reduction of repetitive calculations in Table

If I generate two tables inside a function which are function[n_, x_, y_]:=( table1 = Table[i* x/n^x, {i,1,n}]; table2 = Table[i* y/n^y, {i,1,n}]; ) where ...
2
votes
4answers
178 views

Replacing High Densities of 1.s in Very Large Binary Arrays

I am working with very large binary arrays on the order of {100,100000}. It may look something like this. ...
2
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2answers
217 views

Reducing quality of Graphics3D scene to improve performance?

ProteinData["SERPINA1", "MoleculePlot"] gives the detailed Graphics3D plot below. I'd like to make many small copies of this ...
2
votes
2answers
1k views

Importing several huge files with headers & footers

having here several files in ASCII format http://ge.tt/91rv0Jf/v/0 I want to import, while removing headers and footers and then join the several lists. ...
2
votes
2answers
134 views

Efficient List of Lists

I'm running some analysis that requires the creation, row by row, of a large list of lists. The big list is called "Nodes" and it will ultimately contain hundreds of thousands of rows. The first few ...
2
votes
1answer
150 views

How to determine whether an expression can act as a “good” function?

It's not easy to see whether an expression can act as a "good" function. A good function refers to an operater that transforms symbolic entities like 1+x^2 or ...
2
votes
2answers
164 views

NIntegrate over a list of functions

This question is the result of these other two questions. Question 1 and 2. I thought it would be better to ask a new question rather than deleting previous one. I think When ...
2
votes
1answer
296 views

How to implement the directed Barabasi-Albert algorithm in Mathematica?

Does anyone know how to implement an efficient version of the [directed Barabasi-Albert algorithm][1] in Mathematica that scales until hundred of thousands nodes? The directed network mechanism is ...
2
votes
1answer
143 views

How to speed up my code about Divisors?

This code is about PE496 In[21]:= ParallelSum[n*Count[Divisors[n^2], a_ /; n < a < 2 n], {n, 1, 10^5}] // AbsoluteTiming Out[21]= {5.987342,10724527832} I ...
2
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2answers
126 views

Random Choice: List Format & Minimizing Memory Use

This is a two part question, and for that I apologize.. but they're related! Here's what I'm working with: ...
2
votes
1answer
357 views

Speeding up solving a system of simultaneous equations

I am trying to solve the following system of equations. Solve takes a very long time to solve the following system of equations. Is there any way to speed it up? ...
2
votes
1answer
254 views

Manipulate executes expressions multiple times

I am using Manipulate for a rather intricate front end for data visualization. I was getting very sluggish performance and was able to boil the problem down to a ...
2
votes
2answers
195 views

Time differences between code using user-defined probability distribution and code using built-in distribution

Why is the reponse time of of kernel significantly different when I use the first code rather than the second? Shouldn it not be the same? Is there any way that the response time can be made smaller ...
2
votes
1answer
179 views

Understanding a slowdown associated with wrapping a set of nested Do loops with a ParallelDo expression

I have a set of set of nested Do loops that require data from three different arrays (though the position from each array is fixed per cycle of the outer Do loop). Let's call these arrays: ListA, ...
2
votes
1answer
229 views

Why is LogLogPlot[] slower than Plot[]?

I notice that LogLogPlot runs quite bit more slowly than ordinary Plot. For example, consider the following two blocks of code ...
2
votes
1answer
277 views

AbsoluteTiming affected by surrounding code

In the process of simplifying code posted for another question, I noticed AbsoluteTiming returned different results for the same code being timed, ...
2
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2answers
98 views

How to Optimize Solution? (Project Euler #14) [duplicate]

Link to Question: https://projecteuler.net/problem=14 I began by defining the following functions below. ...
2
votes
1answer
108 views

Optimizing alphametrics code

First of all, thank you all in this great community. I have been reading a lot of threads about Mathematica optimization learning things like using Compile ...
2
votes
1answer
229 views

How can I reduce computation time while still obtaining a good approximation for my function?

I am new to any CAS (and Mathematica, for that matter) and new to StackExchange too, so forgive me and correct me on any mistakes. I have this function: $J_p=\sum_{m,n=1}^{\infty} ...
2
votes
1answer
118 views

Randomly generated polymer with certain spatial density

For simplicity's sake, let the polymer's composing particle be integer 3-tuples (on 3D Cartesian grid), such that: Polymer-ness -- for all particle there is an directly adjacent neighbor. i.e in ...
2
votes
1answer
134 views

Performance on Binomial Deviate is slow

I hope I won't get spanked for reposting. This is related to a previous question discussed here: Performance on Multinomial Deviate is slow. but this version is simpler because it is a binomial ...
2
votes
2answers
132 views

Counting Events in a moving date range

I want to count the number of times events take place in a date range. The counting is done over a window of e.g. 28 days where the goal is to have between 11 and 13 events in the time window. The ...
2
votes
1answer
566 views

Simulated Annealing InitialPoints option

I have a cost function that depends on 4 parameters: CostFunction[{tx,ty,tz,ox}]. I used NMinimize[] function with ...
2
votes
1answer
120 views

What is the best way to produce a symmetric semi-definite matrix using as few variables as possible?

As we know, there are only $\frac{n(n+1)}{2}$ variables in a symmetric $n$-dimensional semi-definite matrix. Is it possible to produce a $n$-dimensional semi-definite matrix whose trace is $1$ using ...
2
votes
2answers
448 views

Mass Symbolic Manipulation with Subscripts? (from plaintext Input)

The simplest example of the change being sought is a greek letter, typed in as plaintext nu, and its may be replaced by the symbol, ν: expr = 3nu*kx*ky+ ...
2
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1answer
329 views

Speeding up code by avoiding repeated evaluation of a function

I want to speed up my code and I have two ideas, but I don't know how I can implement them. Here is a little part of my code, which I want to improve: ...
2
votes
1answer
57 views

Increasing Plot3D speed when plotted function is Eigenvalue

This is probably a really simple fix, but I'm fairly new to Mathematica and am not sure how to do this properly. I know that trying to plot eigenvalues directly can be computationally expensive, so ...
2
votes
1answer
66 views

Performance of a bootstrap - time of computation not linear with number of iterations

I'm doing a bootstrap based on this thread with the following code (file.txt here): ...
2
votes
2answers
68 views

What is the fastest way to get notebook CellGroups / Cells structure?

So the question is how to get this kind of information: from This is one of my ideas: ...
2
votes
1answer
158 views

2D Fourier transform of a few (4) disjoint discs on a plane

I'd really appreciate some advice. Short Version I'm trying to calculate the following $$ ...
2
votes
2answers
123 views

Definite Integral. Perfomance problem

I have a notebook in Mathematica 4. I'm trying to convert it to use in Mathematica 9. One of the problem is the long computation of definite integral. In Mathematica 4 the result of the following code ...
2
votes
2answers
441 views

Collatz Tool Box — any speed ups possible?

I have created a tool box for experimenting with the Collatz conjecture. Info here: Wolfram MathWorld and here: Wikipedia The patterns I have found allow us to make the conjecture jump through some ...
2
votes
1answer
285 views

Speed up iterated manipulations of a graph / table

I am trying to generate a version of Watts' model of cascading shocks to a network following the discussion on p. 20-25 of this article. The basic premise is to use the ...
2
votes
1answer
85 views

Memory usage optimization for a large Association/SparseArray

Reformulating my question in simpler terms. Take two lists list1 = RandomInteger[{1, 100000000}, 25000000]; list2 = RandomReal[{1, 10}, 25000000]; Make an ...
2
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1answer
97 views

Compiling a summation

I have a sum over Legendre polynomials which I'm trying to speed up. I've come across the suggestion of using Compile to speed up code in previous answers around ...
2
votes
1answer
93 views

Simple-looking Minimize takes for ever

Consider the following: Minimize[{(ξ - x)^2 + (η - y)^2, a ξ + b η == c}, {ξ, η}, Reals] After asking Mathematica to do this yesterday afternoon and forgetting ...
2
votes
1answer
122 views

How to use slots and patterns to reduce repetitive calculation?

This is kind of complicated... How can we make MMa calculate values of a function before doing multiple pattern or slot substitutions? Answers to similar questions didn't cover the case where the ...
2
votes
2answers
112 views

Improving the speed/efficiency of multiple (finite range) convolutions for a causal response plot

So I am looking at modelling the response of a system that is excited by multiple pulses over a period of time. The way to find the response at time t is to take the convolution between the impulse ...
2
votes
1answer
118 views

Putting values into a grid after iteration process

I'm developing a model of thermodynamic cycle in Mathematica. I wrote several functions, applied them to a list containing starting values and iterated, for the model to converge. ...