Questions on optimizing Mathematica code for higher performance. This may mean faster execution, lower memory usage or both. Not to be confused with mathematical optimization.

learn more… | top users | synonyms (3)

1
vote
0answers
192 views

Speeding Up Image Processing Functions

I am working with stacks of 1024x1024 timelapse microscopy images that I am performing a series of image processing functions on to help segment each image. These functions include ...
1
vote
0answers
208 views

Speeding up NDSolve for system of differential equations

I am wondering if there is a way to speed up this function that solves a system of ordinary differential equations with NDSolve? Thus far I've tried specifying a few different methods such as LSODA, ...
1
vote
0answers
49 views

Understanding Mathematica: How to write fast code? [duplicate]

I'm relatively new to Mathematica but have done a few projects using it so I'm quite comfortable with the syntax and the basic functions available. Since I've had programming experience in the past I ...
1
vote
0answers
98 views

Speeding up the numerical integration of a certain function

I'm using the following function f[t_] := 3/4 t^-3 NIntegrate[(x^4*Csch[x/2]^2), {x, 0, t}, Method -> {Automatic, "SymbolicProcessing" -> 0}]; I ...
1
vote
0answers
95 views

Dramatic increase in memory consumption and performance drop with ParallelMap

Consider the following toy problem: ...
1
vote
0answers
49 views

A more efficient way of fitting a non-linear model that returns an entire list?

I have a function that takes two parameters, del and nu, and returns a list npoints long ...
1
vote
0answers
135 views

Are there any plans to develop Wolfram OS? [closed]

Are there any plans to develop Wolfram OS? Google has developed Chrome OS/Chromium OS dedicated to easy and fast access to the web. Valve has developed Steam OS that created primarily for playing ...
1
vote
0answers
117 views

How to tweak the following purely numerical code

I am using the following numerical function in my program and I would like to speed it up. ...
1
vote
0answers
38 views

can I evaluate multiple cells at the same time? [duplicate]

my laptop has 2 cores, can I assign a core to evaluate one code, and the other core for another code in parallel instead of evaluating in sequence? thanks
1
vote
0answers
49 views

Hashing by Equals instead of SameQ

I have some numerical code involving complex numbers representing points on a plane. Some of these are equal but not identical, ie ...
1
vote
0answers
78 views

Linear interpolation over 2 variables

I'm tuning a function to data over 4-5 variables using Differential Evolution. The objective function calls frequently interpolation function. I came to a point, where compiling the objective function ...
1
vote
0answers
56 views

Approximate to the speed of Build-In functions

In Mathematica, there is a function PowerMod[a,b,m], which computes a^b mod m. I will concern only this case: ...
1
vote
0answers
616 views

Solve[] unexpectedly giving empty solution sets for extremely large problems

I was calculating the set of lattice vectors in $\mathbb{Z}^4$ which have taxicab norm $r$. For example, executing ...
1
vote
0answers
116 views

Sum slowing down computations

I am trying to compute higher order Casimir invariants for some representations of certain groups. I can get the quadratic, cubic and quartic but beyond that things are taking too long to the point I ...
1
vote
2answers
404 views

Collatz Tool Box — any speed ups possible?

I have created a tool box for experimenting with the Collatz conjecture. Info here: Wolfram MathWorld and here: Wikipedia The patterns I have found allow us to make the conjecture jump through some ...
1
vote
0answers
212 views

Making simultaneous equation solving more efficient

I am trying to solve a system of several simultaneous equations that have been generated by a series of modules and functions, using this module: ...
1
vote
0answers
241 views

Get path to end nodes in directed (partially cyclic) graph

I have a large directed graph containing small loops. I would like to extract all paths to all end nodes (no VertexOutComponent) with a given path length $n$. I ...
1
vote
0answers
80 views

Is the TCPIP link type compressed?

Since I'm already piping a MathLink connection in a ssh tunnel (connect back is a pain!), I wonder if it makes sense to compress the data in the stream (ssh -C). As ...
1
vote
0answers
648 views

How can I speed up numerical integration of multidimensional integral?

I am numerically solving an integral equation that contains a double integral. I have managed to get a solution but it takes forever. I am wondering if there is a way to speed up numerical integration ...
0
votes
1answer
182 views

Plot a solid generated by a family of surfaces

I'm trying to graph a series of planes as a solid object in Mathematica. I first tried to use the Plot3D options as well as the fill options to plot a $3D$ volume, ...
0
votes
2answers
244 views

Seeking faster method than using Table and If together [duplicate]

See the example below. Is there any way to make this execute much faster and still get the same output ? I have read Conditionals slower than operators? but it didn't really help me as I can't seem to ...
0
votes
1answer
128 views

How smart is Solve? Figuring out what tricks I should try

I'm trying to solve a large system (~10000) of linear equations using Solve, but the process keeps failing. As-is, I don't know whether it's failing because it's using too much memory or too much time ...
0
votes
1answer
158 views

johansen test error in code

Cross-posted at the Wolfram community forum I have found this code on a forum, apparently it worked in a previous version of mathematica. Now when I run it, it keeps running for ages. I am not able ...
0
votes
1answer
274 views

How can I improve my code with efficient mathematica built-in functions?

I have written a module for my assignment like below. V[n + 1] = rk[x[n], y[n] ,z[n], V[n]]; vs = V[n].V[n+1]; V[n + 1] = I want to modify it with efficient ...
0
votes
1answer
95 views

How to speed up execution of this function?

How can I speed up the execution of following function, specifically for larger values of n? ...
0
votes
1answer
104 views

Help with Computation-heavy triple integration

I'm Trying to use Mathematica to symbolically integrate a function with respect to x, y, and z. For some reason, this computation either takes about, 60s and returns the input, or takes many hours ...
0
votes
1answer
104 views

Why does initialization slow down manipulate in this case?

I'm trying to manipulate a plot of function with some parameters. The function is a long expression, so I tried to put it inside the Initialization options of ...
0
votes
1answer
206 views

speed up for computing MatrixExp

My code use two method to computing MatrixExp, I expected the second snippet code will faster than the first one, but in fact it a bit slower than that. How can I ...
0
votes
1answer
620 views

ParallelTable 70 times slower on 16 cores than Table on single core

Consider these code(sorry it's messy), why the ParallelTable version is 70 times slower than the Table version? ...
0
votes
1answer
69 views

Extend a function to all polynomials ( just 2 variables) when one knows its values on monomials

I need your help to make my code faster. I have a formula for computing a value from any monomial $x^i y^j$, say formular1[i_,j_]:=(Gamma[i]/Gamm[j] ). It is just ...
0
votes
1answer
164 views

My Baum-Welch algorithm is very slow. Is it due to Mathematica?

I've also posted this question here, since I'm not sure which community is more adequate for this type of question. I've programmed imperatively the Baum-Welch algorithm for a 2 state hidden Markov ...
0
votes
2answers
135 views

Make an effective projection of matrix

To best explain my problem, I will take the following example: Consider the following matrix : ...
0
votes
2answers
165 views

Can I speed up the following plotting code?

I have the following Mathematica code. I do get the output graphs, but it takes like 12 seconds, on my computer. Longer still if I increase the value of n1. Are ...
0
votes
2answers
683 views

Fast Autocorrelation Computation

I want to compute the Autocorrelation Function (ACF) of a data table with $10^6$ entries. I know that there is a built-in function in Mathematica for that, but because I do not know how exactly it is ...
0
votes
1answer
53 views

Returning functions that are partly evaluated

I have some performance issues when calling Table[{h, Slow1[h, n]}, {n, nlist}, {h, 0.1, 10, 0.5}]; for a given list ...
0
votes
2answers
84 views

Is it possible to sum the results of a Map - Apply?

I am fairly new to functional programming and would like to replace a For[] loop that sums the results over a Dataset. This may be a bit different since the ...
0
votes
1answer
85 views

Animating a Large Graphic Aborts, but Dynamic Works Fine

I'm trying to animate a large Graphics output, and it is returning $Aborted. I'm confused because when I use Dynamic and Slider, the graphics output is exactly what I want, i.e., I can 'animate' the ...
0
votes
1answer
91 views

Unusual Slow Down with LocatorPane/DynamicModule

I have coded up a little interactive DynamicModule to help me with image processing/segmentation of stacks of timelapse microscopy images. I am experiencing a crippling slow down in the ...
0
votes
1answer
41 views

Timing enclosed by Manipulate not working [closed]

Manipulate[Timing[Show[somegraphs[[1 ;; i]]]], {i, 1, 500, 1}] (in Mathematica 8) This is the last line of my function f[x_]:= Module[....]. I am trying to combine a list of graphs into a single ...
0
votes
1answer
205 views

How to improve the performance of this code

I have implemented a code in Mathematica 9 to simulate a scattering problem, and I got really disappointed about its performance when compared to Matlab. Since I am a newbie in Mathematica, would ...
0
votes
2answers
504 views

Launching remote kernels - will it help RAM needs?

Given the exasperating RAM needs of my Mathematica program, I contemplated launching remote kernels to run my Mathematica script. This is a two part question: Part 1 If I launch a remote kernel(s), ...
0
votes
0answers
71 views

NIntegrate gives message NIntegrate::vars:

As seen in the code below, I initially constructed a list of functions of two variables ζ and t0. These functions are pure ...
0
votes
0answers
37 views

What is the right way to remove head of a number? [duplicate]

I often have a number for which I want to remove its head, e.g. {1}. I know of two ways to remove the head: {1}[[1]] # & @@ {1} Neither of these methods seem ...
0
votes
0answers
23 views

Timing of an Evaluation is not correctly displayed

From: http://reference.wolfram.com/language/howto/DisplayTheTimingOfAnEvaluationInANotebookWindow.html I ran a process that took about two minutes to finish. But the time recorded is only 0.18 ...
0
votes
0answers
26 views

How can I find all stationary points? i.e Something like MinDetect but for saddle points (that applies to data arrays of arbitrary rank)

I would like to find all stationary points of a data set of arbitrary rank. MinDetect and MaxDetect are great for finding minima and maxima but I can't find a good way of finding the saddle points. ...
0
votes
0answers
16 views

What is the most efficient method to find a single eigenvector with eigenvalue that is numerically 0?

I need to find an eigenvector of a (numerically calculated) square matrix M corresponding to the eigenvalue 0. The methods I know are ...
0
votes
0answers
58 views

Improve performance of processing transactions in a large file

I want to work with a table which has 296,705 transactionslines and 172,147 transactions. ...
0
votes
0answers
113 views

Run out of memory. How to optimize this code?

I have two sets of data: short with 22 entries, long with 46 entries. I want to take 20 entries from ...
0
votes
0answers
118 views

Is there a way to give Mathematica extra memory?

I am running Mathematica 10 (Student Edition) on Mac OS X 10.7.5 on an old Mac Pro. I have lots of extra RAM that the system isn't touching, and I would like to give some of it to Mathematica in the ...
0
votes
0answers
76 views

How to accumulate elements in a list using Reap and Sow [duplicate]

Does anybody know how to rewrite this fragment using Reap and Sow instead of AppendTo. I need to reduce the execution time. Thank you. ...