Questions on parallel computing in Mathematica.

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Integration and Parallel Computing in Mathematica

In mathematica, how would I use parallel computing (or paralleltable) to compute the integrals of $x^2$, $x$, $3x$ from $x=0$ to $10$ just like in the first answer of ...
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1answer
113 views

ParallelTable slowdown for a task involving ComponentMeasurements

I'm having trouble understanding a slowdown associated with code I'm running, which should be trivial to parallelize. My code looks something like this: ...
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0answers
188 views

To what extent can NonlinearModelFit be sped up?

Can NonlinearModelFit be parallelized or compiled to allow one to achieve a scalable speedup for a fitting procedure? Attempting to use this function to fit a ...
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0answers
68 views

How can you link Parallel Mapping and Error tracking

Following this question and the comments made, together with the information in this question, the following code allows error tracking and debugging very nicely. ...
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2answers
496 views

Writing data to a common file during parallel processing

I am executing a loop, and in each loop I have to store a parameter in a file. It is like ...
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141 views

Why doesn't ParallelMap improve the performance of FoldList?

This question arose during my analysis of the following problem: filling gaps. (The code used here is Simon Woods's work.) FoldList seems to not cooperate with ...
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2answers
119 views

ParallelTable with nonstandard iterator

This works as expected: Table[x[1], {x[1], 1, 10}] However, the parallel version ParallelTable[x[1], {x[1], 1, 10}] ...
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0answers
122 views

correct usage of ParallelTable

I am trying to parallelize my script. Here is a MWE of how I have done it: ...
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2answers
222 views

Does Eigenvalues evaluate in a parallelized way?

I use mathematica on a computer with linux operating system. The computer has 2 cpus and each cpu has 4 cores, so there are totally 8 cores available. Now I got confused with whether the evaluation ...
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2answers
214 views

Distribute and analyze large datasets

I need to analyze very large datasets, and they obviously don't fit in a computer memory. I need to produce some statistics on these datasets, and this brings me here: How can I make some statistical ...
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1answer
434 views

How to run an external program in parallel with a Mathematica package?

Under Mathematica 8 (Linux x84_64) I was able to run an external program in parallel from a Mathematica package. However this procedure breaks down under Mathematica 9. Within my Mathematica package ...
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3answers
317 views

Why is this parallel evaluation with Dispatch[] so slow?

Can you efficiently parallelize this? The parallel versions are much slower than the sequential version, and I'm not sure why. Does SetSharedVariable allow ...
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0answers
145 views

Mathlink and multithreading

In order to make my computations faster I have developed a C/C++ application calling Mathematica kernel and performing many operations using Mathematica functions for equation solving. Now I want to ...
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199 views

Parallelizing is much slower than single kernel evaluation?

Starting with a vector of matrices, tVec, I would like to parallelize the multiplication of each element with the same matrix ...
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0answers
140 views

Raster with ColorFunction is blank when Dynamic Updating is disabled

UPDATE Today I was having these WaveletScalogram problems again. I think this is ultimately some kind of interaction issue with Dynamic. I have narrowed it down to ...
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1answer
193 views

Mathematica 7: Problems when evaluating Fourier inside a ParallelTable

after I got such a great response for my first question on this site, I'm very encouraged to asked my second one! So here it is, very generally: To speed up a "row-wise" (i.e. 1D) operation on a ...
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1answer
226 views

How can I prevent these warnings while using ParallelTable

I have this code to find all the permutations of a set of letters that form legal words. ...
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1answer
244 views

Launching remote slave kernels on HPC causes slow down

I had a post earlier regarding how I can run Mathematica at a HPC cluster (running PBSpro) by having a single MathKernel launch ...
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3answers
351 views

Efficient way to utilise Parallel features to make use of many cores

Let's say I have 100 cores/kernels as my disposal and want to compute a function of two variables f[x,y] over {x,1,10}, ...
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1answer
178 views

Parallelization of REvaluate[]?

Is there a way to run several RLink computations via REvaluate[] in parallel, e.g. with ParallelTable[]?
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3answers
621 views

Mathematica Parellelization on HPC

I'm currently using Mathematica on a High Performance Cluster (HPC) which consists of many compute nodes each with around 16 cores. I currently run my Mathematica script on 20 of the nodes that ...
2
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1answer
131 views

Mathematica 9.0 problem: ParallelTable with SQLExecute

I have run into the following problem: when I try to run the following code in Mathematica 9 I get SQL connection error on all kernels. The code is: ...
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1answer
244 views

Why does my attempt at parallelization not work?

I want to run some function with different parameters, parallel on 4 cores (i5). When I run it without using Parallelize, processor has ~25% utilization. It's a ...
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1answer
392 views

Parallelization and Hadoop

The short question: Has anyone used Mathematica in conjunction with Hadoop and does Mathematica's built in parallelization play well with Hadoop? The long version: So I have a Mathematica program ...
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2answers
575 views

why I can't define a commutator operator in this way?

I am trying to define some operators I used frequently.For example, I defined a KroneckerProduct operator as $ \otimes $ as follows: a_$ \otimes $b_:=a.b-b.a and this works fine. Then I want to ...
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1answer
220 views

Determining the partitioning of Do loop iterations between kernels?

Say I have some Do loop that I'd like to evaluate in parallel: Do[Something, {i, 1, M}]. I'd like to split this list up into ...
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1answer
133 views

Understanding a slowdown associated with wrapping a set of nested Do loops with a ParallelDo expression

I have a set of set of nested Do loops that require data from three different arrays (though the position from each array is fixed per cycle of the outer Do loop). Let's call these arrays: ListA, ...
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1answer
98 views

Parallel computing NInverseFourierTransForm

I am running the code below, and it works perfectly. I have some function in Fourier space, and I take the numerical InverseFourierTransform. However, I will have ...
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1answer
93 views

Is it safe to use older version subkernels with a newer version main kernel?

At the moment we only have access to version 8 of the Lightweight Grid (i.e. version 8 of the Mathematica kernel). Is it safe to run version 8 subkernels together with a version 9 main kernel? It ...
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1answer
67 views

local logfiles for remote kernels

I'd like remote slave kernels to produce log files on my local machine, subject to the following constraints: 1) I don't want to install a distributed filesystem or do other administrative work on ...
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1answer
83 views

How can I set the kernel for CreatePalette?

I have written some code that requests some calculations from an SQL server every N seconds and uses a palette: CreatePalette[Dynamic[DateListPlot[...]]] I ...
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3answers
297 views

Suspecting bug in Parallel Framework

I've reduced my actual problem to: ParallelEvaluate[ Module[{slot=1}, Slot[slot] ] ] gives error messages that I think shouldn't be there. It seems I can ...
2
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1answer
508 views

3 hour calculation? ParallelMap & ParallelTable

I'm having some problems with slow Mathematica code... I'm basically doing a computation that's is expected to take 3 hours (!) in my Core i7 with 4 processors... I'm basically computing an index (of ...
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1answer
338 views

Export graphics in parallel

I run a heavy simulation, using NDSolve and the method of lines. This means that the result of NDSolve is a list of, say, ...
7
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1answer
228 views

how can I avoid CPU waste (by master kernel) using WaitNext?

I'm using WaitNext in Mathematica for parallel processing on Mac OS X. I have 4 processors on my MacBook and LaunchKernels[] ...
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1answer
101 views

Draw from HistogramDistribution with ParallelTable

I wanted to check something, but ran into troubles using HistogramDistribution in combination with ParallelTable. The code does the following: Compute a HistogramDistribution of some sample and use ...
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1answer
222 views

How to make this code threadsafe?

I have the following code, schematically: ...
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1answer
270 views

Light Weight Grid and core limitation

I am trying to figure out what would be best for running some simulations using multiple computers where each has it's own mma 8 licence. The main part of the computation involves a parallelized table ...
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1answer
319 views

Progress indicator with shared variables

I'm trying to create a custom progress indicator for a parallelized computation, using Dynamic and SetSharedVariables to display ...
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2answers
407 views

Tell ParallelMap[] to use just specific kernels

Is there a way to tell ParallelMap to use just some specific kernels (as is possible for ParallelEvaluate)? Background: I have ...
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0answers
171 views

Parallel linear algebra with arbitrary precision

Is it possible to do parallel linear algebra with arbitrary precision within Mathematica (in a simple manner, as is done for the machine precision)?
3
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1answer
255 views

Why can't Mathematica parallelize this?

The following code makes mathematica print "ParallelTable::nopar1: [...] cannot be parallelized; proceeding with sequential evaluation." ...
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197 views

Return Functions from parallel execution of module

I wrote a module which numerically solves an ODE using NDSolve. The result from this is e.g. either ...
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2answers
289 views

Use of Cellular Automaton or Discrete Convolution to calculate Potts Energy of a 2D Matrix

In a project of Monte Carlo Modelling of Grain Growth (Link) one of the most costly subroutines is the calculation of the Potts-Energy of an Monte Carlo Grid cell by comparing the center cell value ...
3
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1answer
305 views

using interpolation functions in ParallelMap

Edit I am editing the question to give a simple workable example. It is at the bottom under the heading Example. The original question is now headed withe Background. Background I am trying to ...
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1answer
242 views

ParallelTable and Precision

I'm using ParallelTable[] to calculate a function over a range of my parameters , ($\omega,\ell$). This seems to be working well (in terms of speed increase) except ...
7
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1answer
221 views

Is there a way to convert mathematica code to OpenMP or OpenACC?

I see that Mathematica has limited support for things like OpenCL and CUDA, but what about other standards like OpenMP or OpenACC?
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1answer
202 views

Clearing distributed definitions from remote kernels

The documentation shows the following example to "Remove a distributed definition..." Oh, course this doesn't work without redefining the function prior to re distributing the definition. The ...
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1answer
401 views

Communication between parallel kernels

Greetings. This is my first post here, also, I am not a seasoned programmer, so any advice pertaining to coding that is not directly related to the problem (stated below) is welcome. I am having ...
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1answer
214 views

MapThread and parallel computing

This time I have a very short question. Is there a deeper reason why ParallelMapThread does not exist? Regards, Frink