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1
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1answer
57 views

How to convert Image3D object into Graphics3D object and vice versa?

There are some rendering options (for example, Lighting) which are associated with the Graphics3D objects. I cannot apply these ...
-1
votes
0answers
24 views

How to apply Image3D dynamically [duplicate]

I have a 3D image which is made up of a number of 2D slices. I want to select mophological components dynamically by clicking on them as done here for each slice. Then form a 3D image consisting of ...
2
votes
0answers
96 views

Image3D interactive manipulation slower in 10.4.1?

I've upgraded to MMa version 10.4.1 under MacOS 10.11.4 on a MBP Retina. We use Image3D a lot in our work and it seems like it has gotten very very slow in this ...
0
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0answers
74 views

How to select morphological components of a 3D image by clicking [closed]

This is a follow up of this question and I'm following the answer given by Dr. Belisarius. The updated answer can select morphological components by clicking on them. It was implemented for 2D images, ...
0
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0answers
82 views

Selecting morphological components of a 3D image

This is a follow up of a previous question : Selecting morphological components by clicking on them? I followed the answer provided by Dr. belisarius. It works fine for 2D images. However, I can't ...
0
votes
1answer
76 views

How is the sample 3D image of Knee is created?

The sample 3D image of knee in Mathematica is the MRI of Markus van Almsick(https://www.youtube.com/watch?v=s1ot5MltxM8&spfreload=1). The corresponding image dimension is {128, 128, 128}. ...
3
votes
1answer
100 views

Create a 3D face from the Shroud of Turin

There is an image of the Shroud of Turin: How to recreate Jesus's face from this image? And how to create a 3D face of Jesus Christ, by using the shroud of Turin? I tried: ImageAdjust @ ...
1
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0answers
66 views

Exporting 3D graphics in vectorial form

I often have to export a 3D graphics to a PDF file, to be opened and edited with my favorite vectorial application ('m using Intaglio, on OS X). I frequently get two problems (see the picture below, ...
6
votes
1answer
91 views

Image3D does not give the distinctive blurry look, version 10 Linux

The help file for Image3D shows two examples, But when I try to execute this code on my system ("10.3.1 for Linux x86 (64-bit) (December 8, 2015)") I get the ...
2
votes
1answer
77 views

How to make image3d smaller? Is `ImageResolution` useful?

I want to make the output of Image3D much smaller. For example ...
3
votes
1answer
572 views

How to draw a 3D polygon like this? [closed]

I tried to draw first picture with Raster3D, but the result is strange: So, what is best function to call to draw 3d polygon like that?
0
votes
1answer
103 views

How to colorize a 3D image [closed]

I have a 3D image where the values are in {1/4, 2/4, 3/4, 4/4} and its size is {134, 134, 67}. I used Image3D to display it. However, I am wondering if there is a possibility to colorize the image by ...
7
votes
2answers
226 views

How to resample a list of Images

I have a list of picture(Noting the ordering) first: second: third: forth: My target is get the 3D'image,Now I get the mask of it like following(If you use ...
1
vote
1answer
135 views

Transform a 3D objects to binary 3D matrix [closed]

Suppose that we have an unknown 3d object and we need to estimate it. We suppose that the object is inside a grid as below and we can do some test to eliminate the cubes or"voxel" which are not a ...
1
vote
1answer
66 views

How do I set the transparency in Image3D?

I have an Image3D plot, I like the color palette, but I don't like that for zero values the blocks are simply transparent (I would like them faint, but visible). How do I change the transparency ...
21
votes
2answers
623 views

Convert binary voxel image to geometric region

I have a binary voxel image which described a contiguous region in space. Example: ...
10
votes
1answer
498 views

How to create a 3D model based on MRI cross-sections?

Recently, I stumbled upon the following surreal MRI-scan of broccoli: and ever since the moment that I saw this I've been wondering whether it is possible to recreate the broccoli based on ...
9
votes
0answers
132 views

How to rasterize a Graphics3D expression into an Image3D?

I'd like to make a 3d image from a 3d graphics. Unfortunately Rasterize@Graphics3D[Sphere[]] gives a 2d image, is there any function like a Rasterize3D that does ...
8
votes
1answer
254 views

How to make a Nebulabrot?

A Nebulabrot is a generalization of the Buddhabrot, a fractal rendering technique related to the Mandelbrot set that sort of looks like a meditating buddha. The Buddhabrot rendering technique was ...
1
vote
1answer
73 views

Setting Fixed Axis

Is it possible to prevent the values of axis of a 3D plot from moving? If I run this code: ...
1
vote
2answers
84 views

3D box dimensions

How can I set the dimensions of the box of a 3D function, without influencing the function? For example I want to see this function ...
1
vote
1answer
72 views

How to rescale the axes on a 3D graph?

I currently have a graph in which the x and y axes take values on the order of 10^-4. Which looks messy, ...
1
vote
1answer
114 views

Generate 2d image from image3d object

I have created a image3d from which I have rotated it to create a rotating view of the object. I want to be able to render each 'frame' to a 2d image so that I can export the frame sequence to create ...
4
votes
1answer
187 views

Image3D with values outside of the range [0,1]

I am writing some functions in Mathematica for representing MRI anatomical image volumes. The natural way to represent such a volume seems to be as an Image3D form. However, I've noticed an ...
6
votes
1answer
213 views

Rendering a 3D volume with Image3D

I have 2D JPEG images, of 1024 x 1024 pixels, corresponding to a 500 x 500 square micron section. These images are taken from slices of tissue, each slice seperated by 10 microns. I've been trying to ...
10
votes
2answers
229 views

Synchronizing the camera view of multiple Image3D panels within a Manipulate interface

I'm trying to synchronize the camera view of multiple Image3D panels displayed within a Manipulate interface. A random 3D image ...
0
votes
1answer
119 views

Can't print notebook containing Image3D images

I have a few Mathematica notebooks that have Image3D volumetric images in them. If I try to print a hardcopy of the notebook, Mathematica freezes up (or, perhaps it isn't really frozen, but it takes ...
4
votes
1answer
166 views

spherical histogram for 3D object

I want to develop a shperical histogram for 3D object. Given a 3D object, I put it in a cylinder where its axis pass through the centroid of the object. The cylinder is sampled into a number N of ...
2
votes
0answers
127 views

Limited Opacity Levels in Image3D?

I'm trying to render a simple spherical distribution where the opacity varies with radius using Image3D. Unfortunately, the outcome is not very appealing, with ...
20
votes
2answers
600 views

Object separation from a 2.5D surface

I'm trying to identify the shape and the boundaries of objects. The data was generated with a laser scanner and represent the surface of an area in which many boulders lay on the ground and making up ...
5
votes
0answers
198 views

Challenge: Speeding up MaxDetect for application in 3D blob detection

In image segmentation it is a common problem that objects appear clustered and are therefore undistinguishable from each other when using simple algorithms. Based on this post I obtained efficient ...
6
votes
2answers
513 views

How can I define a 3d-body through different views? [closed]

In one of the maths blogs I follow I stumbled upon the following question: The bottom, side, and front views of an object are shown below: How would the object look in three dimensions? My ...
2
votes
1answer
571 views

How to work with 3D images of STL format

After importing a 3D image of STL format, my possibilities in regard to "3D Volumetric Image Processing" seems rather limited. All examples are given with TIFF files. Is there a way to convert from ...
1
vote
3answers
585 views

Plotting Voxel in mathematica

I am developping a 3D reconstruction application. I recuperate the voxels coordinates (the coordinate of each voxel) of the object that I need to reconstruct. Each voxel have a dimensions like this ...
12
votes
1answer
370 views

What is the default ColorFunction for Image3D?

What is the default ColorFunction for Image3D? I find it a bit confusing that the most intense colour is not shown where the ...
7
votes
1answer
243 views

How to modify tick's range in Image3D

Suppose we have an array of color data ...
10
votes
1answer
524 views

How to convert Graphics3D object into an Image3D object?

How does one convert a Graphics3D object into an Image3D object? E.g., start with ...
3
votes
3answers
608 views

Image3D and Graphics3D

also I guess that the topic was tackled in Combining Image3D and Graphics3D. My question is quite similar: How do I match the coordinate Systems of Graphics3D and Image3D? Here some code: ...
22
votes
4answers
533 views

Running out of memory when partitioning an image with ImagePartition

I have an Image3D object of image type "Bit16" with the dimensions 1472 x 1472 x 1472 that I would like to split into small image cubes of dimension 64 x 64 x 64 ...
9
votes
1answer
356 views

Deconvolution of Image3D object using ImageDeconvolve

I am trying to get the ImageDeconvolve function to work with Image3D objects. In the documentation of ImageDeconvolve it says: ...
5
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0answers
1k views

computation of gradient vector field in 3D using GradientOrientationFilter

I want to compute a 3D gradient vector field of an Image3D object using the built-in GradientOrientationFilter function in Mathematica. From the documentation I ...
47
votes
2answers
3k views

Image segmentation and object separation in 3D using Mathematica

I currently work on an image segmentation scenario to detect cell nuclei in 3D using Mathematica. The data I have are image stacks in the TIFF file format. I would like to keep the sequence of image ...
10
votes
1answer
265 views

Link ITK with Mathematica

I would like to know if someone has tried to link Mathematica with ITK code (call ITK code in Mathematica)?