Questions on the image processing capabilities implemented in Mathematica.

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40
votes
2answers
1k views

Image segmentation and object separation in 3D using Mathematica

I currently work on an image segmentation scenario to detect cell nuclei in 3D using Mathematica. The data I have are image stacks in the TIFF file format. I would like to keep the sequence of image ...
1
vote
0answers
42 views

Black line after ImageTrim

as shown in Image correlation I would like to detect the shift between a stack of images. Here are the images: and here the code: ...
15
votes
7answers
1k views

Is there a way to recreate the typical Red/Blue-Postereffect using Mathematica?

I think nearly all of us have at least once seen an image like this: So I wondered whether it is possible to recreate this effect using Mathematica because it seems like it wouldn't need that many ...
4
votes
2answers
100 views

Layers of Locators of Different Colors?

I am a Mathematica novice trying to do some interactive segmentation of microscopy images. I've been trying to understand and build upon some code from a previous StackExchange discussion (Can ...
33
votes
4answers
2k views

Remove image background of headshot in Mathematica?

For example, using ExampleData[{"TestImage", "Girl2"}]: what's a general way to make the background transparent? I've tried various combinations of ...
0
votes
0answers
24 views

convert a raster colorful image to a vector one [closed]

how we can convert a raster colorful image to a vector one with java code. I should write a java code that do this or a free library.
7
votes
1answer
202 views

How can I extract the outline of bubbles in my image?

I have an image: I tried to extract the outline of the bubbles, but I met with some problems. Firstly I tried the method used in Mathematica documentation for ...
2
votes
3answers
95 views

Speeding Up Replacing of Labels in Large Matrix?

I am Mathematica novice and am trying to find a fast way to replace labels in some rather large matrices (512x512 or 1024x1024) that have resulted from segmenting images with WatershedComponents or ...
5
votes
3answers
369 views

Detect each polygons in an image

Considering this image: Is there a way to colorize each tiles independently? My problem is that img = Import["http://i.imgur.com/Y87duSz.jpg"]; Colorize@img ...
15
votes
3answers
791 views

How to remove constant background from an image?

I'm not sure how to remove the paper background from this logo with v9. This is really not the same as this question, but I think similar methods apply.
0
votes
0answers
41 views

How to get the indices of an Image3D that have a value of interest [closed]

I want to know the list of indices (3D coordinates) of a grayscale Image3D object that are equal to 127 (or whatever).
2
votes
1answer
226 views

Image Processing: Detecting and counting small objects

I would like to analyze close-up images of human hair. My goal is to detect and count the number of hair strands and determine their width, but I am having a hard time binarizing the image. Seems like ...
1
vote
1answer
76 views

Identifying the color in Image

This has mad me Crazy for a while Can any one please Help me solving this this is the Image that I am working on . Basically this image is made up of 98 different color patches 7 patch on each level ...
62
votes
11answers
4k views

Artistic image vectorization

The question is how can we use Mathematica to create vectorized versions of low-resolution images? The goal is to get an image suitable for quality printing at any resolution. Since "true" ...
4
votes
1answer
128 views

Exporting images in a Mathematica array to a PDF s.t. each image is precisely $n \times m$ millimeter in dimension [duplicate]

I have a number of images in a Mathematica array, and I'd like to export the images to a PDF s.t. each image is precisely scaled to be $n \times m$ millimeters in dimension. The idea is that printing ...
5
votes
2answers
128 views

How to color separate a colored-in-pencil drawing?

I'd like to pick out just the "pencil" color in some drawings done by a young member of the household (he'd like to print out copies of these pictures and distribute them to his class mates on the ...
3
votes
1answer
183 views

How to get better quality EPS graphics

Yesterday, I was doing any Tables of 15 graphs similar to the next example, to save .eps and use in latex. In the generation of the graphs Mathematica spends many time. Is possible to reduce this ...
1
vote
1answer
84 views

Moment central of a binary image

I am implementing the Hu set of invariant moments detailed here Hu set of invariant moments. I implemented the moment Image like this: ...
2
votes
1answer
164 views

Segment parts of a picture

I remember that there was some thread of this sort, but I could not find it, so I hope it's ok to open a new thread. I want to segment pictures of the brain, i.e. I only want the area within the ...
4
votes
2answers
241 views

How to create breathing wall effect?

I would like to recreate the effect of the one in this video: Breathing walls This is my first time manipulating images, and because of that, I don't even have a clue where to start. But I think ...
3
votes
2answers
139 views

How to count the number of n-gons and line intersections in an image of a complete graph?

I would like to count the number of line intersections and number of n-gons in a complete graph (which forms a regular polygon). The only way I've come up with that would allow me to do both in ...
5
votes
2answers
139 views

Exporting pictures in their correct size when using Grid [duplicate]

I have a large number of pictures, and I need to place each three of them in a grid with a certain layout. For example, if I have the following pictures: ...
0
votes
0answers
48 views

GraphicsGrid command

When we merge some colorful plots to a single image, with the command GraphicsGrid, the quality of output image will be lost, slightly. That is, for instance all ...
16
votes
3answers
968 views

False Color SEM image with Mathematica

I have a question regarding colouring and binary image filtering, but unfortunately, the system doesn't permit the inclusion of images for first-timers. If anyone would like to see the images ...
2
votes
1answer
220 views

How to make a big image/dashboard containing various data-graph

I want to make and image/dashborad (to export to PDF) with many VERTICAL bullet graphs gauges. And I can´t make it, in a automatic way. In general, the questions are: QUESTION 1: How to make a ...
1
vote
1answer
103 views

Intersecting/Overlapping Image Elements Counts?

I have what I believe should be a relatively easy problem to solve that I have not been able to find an elegant solution for. I need to compare two binary 2D images and count if any of the elements ...
3
votes
1answer
242 views

Overlay two images

I have a series of endoscopic images taken by two cameras at the same time. A color image: and a fluorescent image indicating cancerous cells I now want to overlay the two images to indicate ...
8
votes
1answer
216 views

Fitting Vogel's formula for phyllotaxis to the image of a flower

After having read this question I was inspired to investigate how we could take an image of a plant displaying phyllotaxis and fit Vogel's model of phyllotaxis to the image. The theory is very simple. ...
7
votes
1answer
429 views

Binarize turning image completely black?

Running Binarize (or EdgeDetect) on a filled black and white image is resulting in an all black image. The image has the following color distribution (with most images points falling in either a ...
3
votes
1answer
235 views

Remove borders in a series of images

I have a series of mouse MRI images, here are two How can I automatically remove the metal cage around the mouse to make it look like this: The position of the cage is not always in exactly ...
1
vote
2answers
197 views

Projection of curve 3D (x,y,z) on the x-y plane

I have a following systeme : \begin{equation} \left\{ \begin{array}{rcr} (\beta+\frac{1}{2}\delta^{2})\nu_{1}(u)-\delta\nu_{2}(u)+\nu_{3}(u)& = &0\\ ...
0
votes
0answers
45 views

Change size of a saved plot or image (post-processing)

I have many plots (that take a long time to run) and each is saved to a variable name. For simplicity, say one was: ...
4
votes
0answers
105 views

Multi-Camera streaming using Mathematica

I am attempting to capture dynamic streams from multiple usb webcams using only mathematica. Using ImageCapture["Device" -> $ImagingDevices[[x]], I've tried to ...
10
votes
2answers
1k views

How should I reproduce this colorful swirling gif?

Surfing on the web, I came upon this cool gif: Does any one know how to reproduce this in Mathematica? I have some ideas myself, so I will try to answer this question as well.
2
votes
2answers
419 views

Generating x,y coordinates for an edge detection

I'd like to be able to process a number of graphics that have edge contours and output a list of $x$, $y$ coordinates to be used for generating a spline in another program, or in Mathematica, to make ...
7
votes
3answers
409 views

Line Intensity Profile From Image

I can get line profiles from images using imagej but it would be nice to be able to do this in my mathematica notebooks. I found this http://library.wolfram.com/examples/intensityprofiles/ after ...
27
votes
5answers
2k views

Identifying critical points of 2/3D image/cubes

Upshot I am interested in identifying critical points of a 3D field/cubes (maxima, minima, tube-like and wall-like saddle points) and 2D field/image (maxima, minima, saddle points). I.e. the ...
3
votes
1answer
106 views

Strange ImageFilter results

I am trying to perform some neighborhood analysis on an image, but ImageFilter seems to be interfering with the results outputted by the provided filtering function. Initialization Given the hue ...
3
votes
0answers
99 views

How to measure the speed of ball from a video or a set of pictures? [closed]

Suppose a camera and the need to measure the speed of a ball such as a tennis ball. Usually, the speed of ball is measured with Doppler effect where the pulse difference reveals the speed. Now I want ...
11
votes
2answers
185 views

Rotational Averaging of Image Periodograms (FFTS)

I'm writing a code to do rotational averages of image FFT's. I have a working version but it is pretty slow. Wondering if anyone has any thoughts on a way to do this more efficiently. Data looks ...
1
vote
1answer
155 views

Data filtering using Butterworth filter

I want to filter data using Butterworth filter. I am currently using Matlab and I want to know how to do it in Mathematica. I have the following data: ...
9
votes
2answers
225 views

Measuring curve length on a binarized image

With the help of almighty Mathematica 9, I got from this To this: with this code: ...
1
vote
0answers
58 views

ImageCapture on Windows 8.1 [closed]

I have an Asus SmartTab tablet with Mathematica 9 on it. When I run ImageCapture, nothing shows up in the image window. Originally running this completely crashed ...
1
vote
2answers
183 views

How to apply function f for each time value t, to each pixel from image, resulting in t images

I have a 2D array of complex values and I want to apply a function to every entry of the array, for every timepoint t in a list. I know how to apply my function to one entry for every time t in a ...
2
votes
3answers
136 views

Recover data points from RGBColor of known ColorScheme

In general I want to recover the z-values from an image of a DensityPlot. A simple example might just be ...
5
votes
2answers
437 views

I want to get a special curve in a picture

I have a picture,and I want to get a special curve in this picture ,than draw the line in a new picture.inbut I can't do this . Like this: The picture is this Anybody have an idea?
9
votes
4answers
1k views

How do I find the coordinates of points in this image?

I have never used image processing with Mathematica. I need to get the coordinates of the red points from this image I made in Illustrator. Is there a way to get Mathematica to read or detect the ...
3
votes
1answer
200 views

Partitioning an image based on features

I have an image that has various characters hand drawn in it, like numbers and letters. I'm trying to partition each character into it's own image so I can run it through ...
4
votes
2answers
177 views

Band Intensity Quantification

I would like to measure the density of my western blot band by measuring the area under the peak from this plot. More specifically, my image will have several lanes with a pattern of bands in each ...
7
votes
1answer
472 views

Anti-aliasing a fractal-like bitmap image

I have a .bmp image 9600x5400 that shows a lot of points at various intensities. There are no lines inside this picture - only a lot of points. I would like to apply anti-aliasing on the image to make ...