0
votes
0answers
41 views

How to get the indices of an Image3D that have a value of interest [closed]

I want to know the list of indices (3D coordinates) of a grayscale Image3D object that are equal to 127 (or whatever).
4
votes
0answers
78 views

Challenge: Speeding up MaxDetect for application in 3D blob detection

In image segmentation it is a common problem that objects appear clustered and are therefore undistinguishable from each other when using simple algorithms. Based on this post I obtained efficient ...
0
votes
0answers
39 views

How to get shadow of a 3d object [duplicate]

Suppose that we have a box or a sphere or an other 3D object and a ponctual light source. How we can generate the cast shadow using mathematic? Is there any tools to render a shadow given the light ...
18
votes
4answers
389 views

Running out of memory when partitioning an image with ImagePartition

I have an Image3D object of image type "Bit16" with the dimensions 1472 x 1472 x 1472 that I would like to split into small image cubes of dimension 64 x 64 x 64 ...
9
votes
1answer
231 views

Deconvolution of Image3D object using ImageDeconvolve

I am trying to get the ImageDeconvolve function to work with Image3D objects. In the documentation of ImageDeconvolve it says: ...
4
votes
0answers
512 views

computation of gradient vector field in 3D using GradientOrientationFilter

I want to compute a 3D gradient vector field of an Image3D object using the built-in GradientOrientationFilter function in Mathematica. From the documentation I ...
40
votes
2answers
1k views

Image segmentation and object separation in 3D using Mathematica

I currently work on an image segmentation scenario to detect cell nuclei in 3D using Mathematica. The data I have are image stacks in the TIFF file format. I would like to keep the sequence of image ...