# Tagged Questions

Questions about handling graphs in Mathematica, graph theory, graph visualization, GraphPlot, the built-in Graph type and the Combinatorica package.

55 views

### Logic behind Graph[edges, VertexLabels -> “Name”]?

I find VertexLabels -> "Name" a strange setting to achieve graph nodes labeled by their index: ...
89 views

### Can Mathematica draw networks with nodes having multiple layers?

Some example networks like this:
35 views

### DataRange not working in GraphPlot

I am trying to create a a GUI that uses the GraphPlot function to automatically generate graph vertices. I am using the VertexCoordinateRules option to designate that I want some of the vertices to be ...
167 views

### How can I scrape the social network for a subset of users in Twitter?

Clearly one cannot scrawl the entire network... but I'd like to extract a statistically representative sample from the network. More specifically, I'd like to access the graph induced by scraping the ...
173 views

### Getting coordinates of a embedded graph [closed]

I have to show how spring embedding works by displaying step-by-step images of a GridGraph[10x10] being embedded from a initial circular form to the final form, which should look somewhat like this: ...
76 views

### Import mixed graph from Excel

I am new to Mathematica. I want to use the software as it allows analysis of mixed graphs (directed and undirected edges). I have my network as an Excel spreadsheet of three columns: source, target ...
116 views

### Plot a tripartite Graph with its groups separated

I would like to create a Graph like the following: but without edges between vertices in the same group. so I have a graph and I want to plot it such that its ...
63 views

### Question RE DiscreteMarkovProcess Graph Labels

I'm trying to label the arc's of my Markov chain with symbols like $\alpha$, $\beta$, etc., to show how the Markov chain looks abstractly. So, I did this... ...
81 views

### How to draw phase portrait graph for nine system of differential equations in mathematica? Can have a code for darwing this? [closed]

The differential equations for the transmission dynamics of HIV/AIDS are given as follows: ...
142 views

### How to create a recursive TreeGraph

How could I create a recursive tree graph, such as one defined by the following: A family of trees $T_n$ are defined recursively as follows, for all integers $n \ge 1$. The tree $T_1$ consists of a ...
183 views

I am using ...
168 views

### How can I get from a list of characters representing a permutation to graphics showing the cycles?

I am trying to graphically represent cycles in various permutations of the alphabet, and have a question in two parts. I have ...
71 views

### Better layout for large a directed graph?

This shows a directed graph for an iterated n-bit pseudo-random function parameterized by s. ...
256 views

### Relaxation of Mass-Spring System with Pinned Masses

Problem Assume that four masses are connected to each other by springs while two of them are pinned down at their initial positions. Find the position of masses when system is at its minimum ...
89 views

### How to input an adjacency list?

I am a beginner user of Mathematica, and I have an assignment to construct a graph given n (number of vertices) and an adjacency list. My idea was to make a For cycle that repeats n times, and for ...
70 views

### Better control of vertex positions in GraphPlot?

I am trying to graphically visualize a sort of a transformation network. My program generates a list of vertices and edges and I want to turn that into a visually clear graph fulfilling a few ...
51 views

### Replicate CommunityGraphPlot as a Graph

Is it possible to format a Graph object in a similar way to CommunityGraphPlot, but retain it as a Graph? I've been playing with FindGraphCommunities but I'm obviously missing some of the ...
23 views

### How to make the vertices move with the VertexRenderingFunction graphics when clicking and dragging vertices of a layered graph [duplicate]

I have read the suggested similar question here: VertexRenderingFunction (or EdgeRenderingFunction) with movable nodes? and Mr. Wizard's solution. Please could someone help me to apply his method to ...
50 views

### Undocumented options for “BalloonEmbedding” in GraphLayout

From an error message, I see some options of the BalloonEmbedding method for GraphLayout: ...
73 views

### How substitute an AbsolutePoint for a car drawing or car icon?

$CAR$ ...
102 views

### Import GEXF graphs into Mathematica?

Is there any smart way to import gephi graphs (*.gexf) into mathematica ? I mean other than converting to *.gml.
217 views

### How to set the Y coordinates for a Graph with defined X coordinates to prevent overlap of nodes?

I would like to draw a Graph with defined $x$ coordinates and variable node sizes. If I simply replace the $x$ coordinates of a graph, then nodes can overlap and ...
110 views

### Find all perfect matchings of a Graph

I'm trying to find all perfect matchings for some bipartite graphs. For example ...
43 views

### Is it possible to visually edit a graph?

Given a graph, obtained by something like CompleteGraph[5], can I somehow add/remove edges/vertices visually? Or is the only alternative to transform it via ...
89 views

### Graph: ordered vertices

I have tried things like ...
61 views

### How can I construct a random graph, which is created by adding orientation to a complete graph?

Given a complete graph on N vertices, how can I randomly orient all of its edges? I thought about starting out with CompleteGraph[n], and then somehow transforming ...
250 views

### Can I solve this graph theory problem with Mathematica?

Internet browsing I came across this problem, as can be solved using Mathematica. Edit: The image says: Place the following numbers 1,2,3,4,5,6,7 in the following diagram (all), without repeating any ...
96 views

### VertexLabels, EdgeLabels and the direction of the arrows on a directed graph

I want to have three network types. My plan is to put them together in a figure file via marking them with (a) (b) and (c). The figures that I want to have, have some problems. Here is my code ...
117 views

### Draw mesh edge / map a graph to a mesh

I am doing a "force density" method to generate a mesh under certain load. The original mesh is like this: Then, I generate a IncidenceMatrix from the graph for further matrix transformation and ...
449 views

### Something interesting about Pi, but something seems amiss

I saw something interesting about text-analysis - bigrams - in Basic Text Analysis in Mathematica I wondered how the bigrams of Pi's digits might appear. As expected, take enough terms and every ...
70 views

### Successive addition or deletion of vertices (or edges) in graph

I am trying to perform a kind of dynamic graph simulation where vertices and edges of graph are added and deleted according to the current state of the graph at each time step. I know that there are ...
132 views

### Random geometrical graph generation

I would like to generate a random graph on $[0,1]^2$. Each node is connected to one other if the distance between two nodes is say 1/4 or less. Here is an example with 50 nodes and 200 edges I would ...
56 views

### Trying to write a program to find an approximate harmonic function on a given graph using relation method

So given an undirected graph with two vertices that have fixed values assigned to them, a harmonic function is a function that assigns values to all other vertices such that the value assigned to each ...
217 views

### VertexRenderingFunction (or EdgeRenderingFunction) with movable nodes?

In GraphPlot, I'd like to use VertexRenderingFunction (VRF) and have the resulting object behave the same way under dragging verticies as it does when I do not use VRF. The same issue occurs for ...
55 views

### What do the default shapes/colors in DiscreteMarkovProcess Graph mean?

In making markov chains, I know how to do that, but I am curious as to what the different colors, and shapes of the vertexes in the graph output mean. as example; ...
59 views

### EdgeRenderingFunction For 2 Vertices in a Loop

Assume there is a set of rules: set = {"A" -> "B", "B" -> "A", "B" -> "C", "C" -> "D", "D" -> "A", "C" -> "C"}; which we want to graph using ...
62 views

### Efficiently or Elegantly construct linear graph list from vertex pairs

I am processing MRP data, with BOM relations as pairs of part number strings. I want to construct lists that represent the linear graphs defined by these pairs. Here is some code to generate random ...
27 views

### FindIndependentEdgeSet behaves differently in v9 and v10

The following code gets different output in v9 and v10. ...
196 views

### Drawing a path which realises the diameter of the graph

So I enter a (0,1) adjacency matrix and I get the following graph: The diameter of this graph is 4. How can I ask that two vertices which realise this diameter be drawn with different filling ...
347 views

### Is there a bug in FindClique?

If h is a graph, FindClique[g, {n}] should return a clique on exactly $n$ vertices if one exists in ...
51 views

### Adding a title to TreePlot

This is a basic question I am sure, but cannot seem to find the answer in the documentation. Does anyone know how to add a title to a TreePlot?
104 views

### Color edges of a multigraph when there are parallel edges using Graph[] and EdgeStyle

This a related question to : How can I display a multigraph with different colored edges? However I'm not using GraphPlot. Instead I'm using Graph and EdgeStyle attribute. Take this graph : How can ...
324 views

### Automatically convert pairs of directed edges to an undirected edge?

I have a directed graph, which for some pairs of vertices, has a directed edge between them in each direction. I would like to replace such pairs of directed edges between the same vertices but in ...
36 views

### Error with AppendTo [duplicate]

I am trying to write a function that builds a graph, or - better said - adds a layer of leaves to a pre-existing graph. Basically, I hand to the function three lists. ...
45 views

### Draw a single disconnected vertex [duplicate]

I am just started using Mathematica. I am trying to split my graph into two sets. 1. How does Mathematica split the graph into 2 subgraphs (connected or disconnected)? 2. How can I draw a graph with ...
83 views

### LayeredGraphPlot: how to specify edge endpoints?

What directive within the LayeredGraphPlot command specifies where the edges attach to vertices? For example, instead of the left output below, I'd like to have the right one. ...
67 views

### TransitiveClosureGraph` doesn't return self-loops for nodes that are in a cycle

This is from boost library documentation: The transitive closure of a graph G = (V,E) is a graph G* = (V,E*) such that E* contains an edge (u,v) if and only if G contains a path (of at least ...
276 views

### Using GraphData to generate all directed graphs with n vertices

Using Combinatorica, it was possible to generate unlabeled (non-isomorphic) directed graphs of $|V|=n$. Here the example is for $n=4$: ...