Tagged Questions

1
vote
1answer
56 views

How can I stop DiscreteMarkovProcess[] from relabeling vertices?

I'm attempting to calculate the mean first passage time between two vertices, $v_1$ and $v_2$, provided some undirected graph $G$. However, I noticed that running the following script: ...
0
votes
2answers
52 views

How can I efficiently and uniformly sample the set of vertices a fixed edge-wise distance away from a chosen vertex?

I have a large graph $G$, which may be either directed or undirected. How would I use DepthFirstScan[] or BreadthFirstScan[] to ...
2
votes
0answers
56 views

Fast calculation of commute distances on large graphs (i.e. fast computation of the pseudo-inverse of a large Laplacian / Kirchhoff matrix)

I have a large, locally connected and undirected graph $G$ with $\approx 10^4$ vertices and $\approx 10^5$ to $\approx 10^6$ edges. Moreover I can bound the maximum vertex degree as $Q_{max}$. I ...
4
votes
0answers
86 views

Counting paths of a certain length between a source and sink vertex

I have a graph $G$, which may be directed or not, and I was wondering if there was an efficient way of using, say, BreadthFirstScan[] and FindShortestPath[] to count the number of paths between some ...
7
votes
1answer
163 views

Making FindShortestPath a little bit sloppy [duplicate]

I have a dense graph, and I'd like to find multiple "almost shortest" paths from a source vertex, $v_s$, to a sink vertex, $v_s$, on an undirected graph $G$. How can I repeatedly run ...
5
votes
2answers
204 views

Is there something akin to “SubgraphIsomorphismQ” in Mathematica 9?

Provided two unlabeled graphs, $G$ and $H$, I would like to test where $H$ is a subgraph of $G$. In other words, I'd like to test whether we can prune some fixed number of vertices or edges from $G$ ...
2
votes
1answer
64 views

Is it possible for me to explicitly specify a point list for SpatialGraphDistribution?

The function RandomGraph[SpatialGraphDistribution[n, r]] generates a random geometric graph over $[0,1]^2$ where vertices are connected if they are within a ...
2
votes
1answer
74 views

Determining whether two k-chromatic graphs are equivalent (not simply isomorphic) using IsomorphicGraphQ?

In a previous question of mine, I asked whether Mathematica's built-in routines could determine an isomorphism for two $k$-chromatic graphs, Determining whether two $k$-chromatic graphs are isomorphic ...
9
votes
2answers
157 views

Determining whether two $k$-chromatic graphs are isomorphic (respecting vertex coloration)

Consider the case where I have two $k$-chromatic graphs $G_1$ and $G_2$, i.e. two graphs where individual vertices can be colored with one of a set of $k$ total colors, and I would like to determine ...
2
votes
0answers
120 views

How can I compute the chromatic index and number of a graph?

I saw a recent question from M.R. and realized there is no function to compute the chromatic index and number of a graph, other than a really slow method in the now deprecated Combinatorica. So, how ...
14
votes
2answers
380 views

How can I speed up the classic GA for graph coloring?

I'm trying to compute the chromatic number of this graph (which is 28): g = Import@"http://www.info.univ-angers.fr/pub/porumbel/graphs/dsjc250.5.col"; My genetic ...
1
vote
1answer
118 views

Community structure algorithm [closed]

I'm using CommunityStructureAssginment[] from GraphUtilities but not sure what is the algorithm behind it. May be someone knows what is the algorithm? Or any info on the community structure ...
12
votes
2answers
773 views

Simple algorithm to find cycles in edge list

I have the edge list of an undirected graph which consists of disjoint "cycles" only. Example: {{1, 2}, {2, 3}, {3, 4}, {4, 1}, {5, 6}, {6, 7}, {7, 5}} Each ...